RNA id: AMCG00003818


Basic Information

Item Value
RNA id AMCG00003818
length 6586
RNA type mRNA
GC content 0.50
exon number 17
gene id AMCG00003818
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19152616 ~ 19169651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACTATCACACATCTGAGATTTTTGTCTCCGTACAGGCACCGTACATTCCTAGCCAATCACACGCCAGTATTGCGAATCGGAAGAGGCGGAACCGGCGGGATCCACTGAACgagaaaaatagaaaagtgtTCGGAATTTAAATTGATGTGGAAGAAATAATAAGTaggtatttaataaaatagatgGAGTGCATTAACGCTAAATTTGTGTCGCAAAAGATCAGCAAGACACGATGGAGACCGGTCTCTTCTGCCTCGCTTCAACAACCAGATATATTCGCTACGGGGTCCTGGGATAATGAGGACAACAAAGTTTCCATCTGGTCTGTCGGAGAGCATGGAGTCTCCAGCATGGAGGATGAGTTTGAAGGAGATCCTCAGCTCCTGTGTGAATTCAAACATGACGGCGATGTCCTCGACCTTCAGtTTTTGGACATGGAGAGAATTGTTACAGCTTCATCCACTGGAGCAGTTACCATCTTCCGTCACCACCACAACAGCCAGACTCTGTCTGTGGCTCAGCGTTGGGATCGGGCACACTTCTATTCCTGTGACAATGCCCCCTGCACGGGTGTGGTGTGCAGCAGCCCAGAGATTGTGTCGGTTGGGGAAGACGGTCGGATCATGCTCTTCAGAGTGGAACACAAAGGAGTCATACGCACCATAGacAATGCTGATAGCAGTACAATCCATGCTGCAACTTTTCTGAGAACAACAGAGGTTCTGACAGTCAATTCTATTGGCCAGTTGAAACTGTGGGACTTCAGGCAACGGGGAAATGAACCATCACAGATCCTCTCCTTAACTGGGGACAGAGTGCCGCTACACTGTGTGGACAAAAACCCCAACCAGCAGCACATAGTGGCTACAGGGGGGCAGGACGGCATGCTGTGTATCTGGGATGTAAGACAGGGCAACATGCCGTTCTCGCTCATGGAAGCTCATTCTGCTGAAATGTGGGAGGTCCACTTCCATCCTTCCAACCCAGAACACCTGTTCACCTGCTCAGAGGACGGCTCTCTGTGGCACTGGGAGAACTCCACCAACACTGACACCCCATCGTTCTTACAAGGTGGAAGAAATACTACCATAACATCACGCAGCACTGTTGGCCCTGCCAATGCAAATCAGTCCTTGATAAGCTCCTGGTTAAACAATGACTCTTCTAAAGGCCGTCTGGAGACGACAAACATGCTTCCCAGCCAGACCATGTCTGTGAACAGTTTGGATGTGCTGGGGCAGTGCATGGTCTGTGGGACCGATGGGGAAGCCATTTATGTCACAAAACGTGTGCCATCAAGAGTGGACTATCCGAGCGACACCGGGACAGAAAGAAGGACAGCAGTGATATCCGCGGCACCGCTCAATCCGCACACGGTCCACTGCCGCCGCGGCGCTTTGTCCTCAGTACAGTGTGGTAATGAGCTGCAGACCGGAGGCGCTAGaTGTTGCTTTGGCACTAGGACAACAAATGTGAAGAGGAACGAAGCCCAGTCCAGCCAGTGTCGTTTTAGTTCTCGCGCATCAGTGACCGCCCAGTTGCTGAGAAGAGGGGAGAAACCCGAAGGATACCGACAGGTGCGGCCCAAGACTTTCCCAGCGAGTAATTACACTGGCAGCAGCCATCAGATGCTGCAGGAGATTCGGGAGAGTCTGCGCAACCTGTCCAGGCCCTCCGATGCGGCCAAGATGGAGTGTAGTGCTGGGAAAGGGCTGGCAGAGGATCCCAGGCAACAGGGCAGGAACACCAACCCAAAATCAAACACCTACCATAAAGCCCTTCAGGAGATCCGAAAGTCCCTGATGCCTTTCGCCAATGAGCCCAGCTCCTCGGGCAGGGGTACCTCTGAGGTCAACAAGCAGATGCTGCTGGAGTTGCAGACTGCTGGATTTGAGGAGGAGATGGTGATCCGTGCTCTGAAGCAAACCAATAGCCGGAGTGTGGAAGCTGCCATTGAATACATCAGTAAAATGAGCTACCAGGACCCATGGAGGGAACAGATGGTGGCTGCTGCTGCACGGCCAGTAAATGCTGGCATGAAAGCTCCTGGTCATATCCAGCAGCCGGTGCACCGCAAGCCAAGCTGGAAGGGCTCCAAAGAGTCGCTGGTTCCTTCCAGGCACAGCTCTCCTCTCGTAGAGGGGATGATGTATCGCTCCGATAGCCCAGGGCCGCAAGGTGAACTGGGAGGGCGACCACCATCGGGCTCGGGACTCGCAGCCTTCACCCAGGGTCACCAGGGCAATGGGCAGCGTGTCaaccctccccctcctccacagGTGCGTAGTgtcacccctcctcctcccccaacCCGGGGcaccaccccaccaccaccatcctGGGATGCAAACCCTTCTACCAAGCGCTTCTCCGGCAACATGGATTACCTAGTACCCCGCATCTCCCCAGTCCCTCAGAGTGCCTGGTCTGATGGCTACTCTGCGGCCCCCCCTCAGAGTCAGAGAGGAATCAGCCCTGTGCCGGTGGGCCGACAGCCTATCATCATGCAGGGACCTGCGGGAAACAAATTCAGCTTTCCTGGCTGGGCTCAGAATGGTTCGGGACAACCTGATTACTTGGGACACCAGAATGTAGGcatgagcagcagcagccggcaacccccacccccttatcCCATGAACCAGGGCAACAGGCAGAGCCCCACTGCTGTGCAAATGCAAGCAGGTGGACCCGCCTCCTCGCCCACGTATGTCAATGGTGGCAACATCCCTCCGTCCATGATGGTGCCCAACCGGAACAGTCATAACCTGGACCTTTACAACCTCAACATTCCTGGGATGCAGCCTGCCTGGTCCCAGCCGCCTCCTCCCCCTGGTCAGCCCCAGTCCTCTCCAGGCAATGGCAGCCACGAGATGCCCACGTCCTGGCAGCACAACATCCCTGTCCGCTCCAACTCGTTCAACAGCCATCAGCTAAGCAACAGGCAGAACCACCCTGCAAACTCCCAGCCCTCTGCCACCACTGTGACAGCCATTACCCAGGCGCCTATTCTCCAGCCTGTGAAAAGCATGCGGGTTCAGAAGCCAGAGTTGCAGACAGCTGTTGCTCCCACCCATCCTCCCTGGATGCAGCAGCCGCCCCCTCCCAGCCCCTTCCAGGATGGGCCCCAGCCTATGGGATCGGGGACTACAGTGGCTGAAGTGCCTAGCTACCAGGGCCCTCCACCGCCCTACCCAAAACATCTCCTCCAGCAGACaaacaccccctccccctcctatGAGACCGCCACTAAGCAGAGCAGTGGCAAAGAGGAGCAGGGCCATGGAGCAGGTAGAAAGGAGCaagaggaggagggcagcagcagcagctccagtgACAGGGCAGAGAGCTCAGAAGGTGCTGTTGCTGCAACAGACCGGGAGAAGAAGCAGATTACCACCTCCCCTGTCCCCGTCCGCAGAAACAAAAAAGAcgaggagaggagagagtcCCGCATCCAAAGTTACTCCCCACAGGCCTTCAAGTTCTTCATGGAACAGCATGTGGAGAACATCCTGAAGAACAATCAGCAGAGGATGCGCCGCAAAAAGCAGCTGGAGAGCGAGATGCAAAGGGTGGGCCTTTCGGAAGATGCCCAGGAGCAGATGCGTATGATGTTATGCCAGAAAGAGTCCAACTACATACGGCTGAAGAGAGCAAAGATGGACAAGTCCATGTTTGTGAAGATCAAGACCCTGGGGATTGGGGCTTTCGGGGAGGTGTGTTTGGCAAAGAAAGTGGACACCAACGCGCTGTATGCCATGAAGACCCTGCGGAAAAAGGATGTGCTGTTGAGGAATCAGGTGGCTCATGTCAAGGCAGAGAGGGACATCCTGGCCGAGGCAGACAACGAGTGGGTTGTGCGACTCTACTACTCCTTCCAGGACAAGGACAGCCTGTACTTCGTCATGGACTACATTCCCGGCGGAGACATGATGAGCCTGCTGATTCGGCTGGGCATCTTCCCCGAGGAGCTGGCGCAGTTCTACATCGCAGAGCTCACCTGTGCGGTGGAGAGCGTGCACAAGATGGGCTTCATCCACCGTGACATCAAGCCCGACAACATCCTGATCGACCGCGATGGACACATCAAGCTGACGGACTTCGGCCTCTGCACCGGCTTCCGCTGGACACACGACTCCAAGTACTACCAGAGCGGTGACCATATCAGGCAGGACAGCATGGACTTCAGTAAAGAATGGGAAGATCCATCAAACTGCCGCTGTGGAGACCGACTGAAGCCCCTGCAGCGGCGGGCAGCACGGCAACACCAGCGGTGCCTGGCTCACTCTCTTGTCGGCACGCCTAACTACATTGCCCCTGAGGTCCTGCTGAGGACAGgttacaCTCAACTCTGTGATTGGTGGAGTGTTGGTGtcattttatatgaaatgttaGTTGGACAACCACCGTTTCTGGCAACTACACCACTGGAAACGCAGCTTAAGGTGATCCACTGGCAGACAAGTCTCCACATCCCCCAACAAGCCAAACTGAGCCCTGAGGCCTCAGACCTGATCATCAAGCTGTGCCGGGGCCCCGAGGATCGACTTGGCAAGAACGGGGCTGATGAGATCAAAGTGCAGCCTTTCTTCAAGACCATTGATTTCTCTACCGACTTgaggcagcagcagcggccAGCCCCGTACATCCCCAAGATCACGCACTGCATGGACACTTCCAACTTTGACCCCGTCGACCCCGACAAGCTGTGGACGAGCGACGATGACGCGGAGGGGAAGAACAACGACACCCTGAATGGTTGGTACAAGAATGGCAAACACCCCGAGCACGCTTTCTACGAATTCACCTTCCGCCGTTTCTTTGATGACAACGGACACCCCTACAGCTACCCGAAACCCATCGAGTACGAGGGCTATGACCAAGATGACCTCGATTCGGAGCCCCAGCAGCAGGAAATGGGGCGGGAGCAGTCCAGCCGGGGAGGACAGGGTCGTGATCTAGTGTATGTGTAGCCTGAGTACGGTCTACCCTGCGCAGACTCCTGAGAGCGCACATACAAACTGACTTTTGTCACCAACTTCTACCTGCATCACTGCTGCTGCAaaaggacagggagagaggaaaactTGTTTTAATAGTAACATTTAGCTTTTTCCACATCTCCTTGATAGTAGTTGAGCAGGTCTAGCCTGGAAAGTCAAAGATGGACACAGATTGTGTGAGGAAAGACATTCAAAGAAAAGTCTGTTGAAGCCCATACTACAGGTGTATTTATTATGGAGTGTACAATGTATTTCTCAAATATGGTGTCTAAGCAGAAACGTTCAAATCGACTTGTGCAAAgactttacaatgttttctttatctgaatctttattttaaagaaataacaacccctttcttaatttatttaaatattttaaactgatgATAATGGTAACACATTCAAGATAAACACtatcattttttgttcttttagaaactgaatattttattggaaatatgtcttaatttataatttagtaGGTCTCATTTTGTTAAGTTGCAAAGGTGAACTATATCGATCTCTCATTTGGAGAAATTGATTTTGAGATGGAATAAGTAAAATCCTTGAAGCTAAGTGTACATTGCAGTGCCTTTTCAAATCCTCTGCTTTCTTTTACCAAATATTAGAACAATTTCAATCACCTTGGCATTTTTTAATGAGGTCATTTTTCTTAGGTGAGATTTAGTGGATTTTACTagtaatttgtgtattttcttcctaatttatacatatacatgtatttataaattatgcTGTATAAATTACATGTAAATACTGTTCTTATCTATCCTGTTGGTTTCATTGATAAGCTATCCTAGGGCAGgccctcttgttttttttccttgtagttctgtgctttttctatAAGTTTTTTGATTATTCACTTGGCCTTTCCATCCCTTGCCCCtttttgaaacaaataaatgcaccaGTTATTACCAATATTCTAAGGTCTTAGAGGAGAACAGCACATTGAGTTTAATgagtttaaacaaattaaatcaattttattcCTTTATATTAAACAGGGACCATGCTTCCATCTGTGTAGGAAAAGGTCTTTATCTCGAAATACTGAATATACCCTCTCCCCAGCTGGCAGGTCATATGGCATGCAACAGGGGAGGATGATGTTCTTTGGGATTTTAGGAAAGGCTTTCAACAGCTTTCTCTCTTTATGGGGAAGTGGGTATTTGTGGTGATGTAAGTCACGCACAGCATCTCCTGAGATGGTTAACCCAACTATTGAGGAGGTTTACACTTTCAATGTTATTCTGGAGTATGATCAatatttctacttttttttttttctttttcttttttttaaccataatCATCTTCTCAAGAATTCCAAATCAGTTCTTAATGTAAAATTTACAATGGGCAGCGGAGGgggagagaataaaaaaatgaaacctatgatttgtttgtttttttattatttcaactaTATTCCCAAACCAGTACATTCTGTTTAGGAACTGCTATTTTTCCACTGActtaagaaacatttaattttgtattgtaggAACCAGAATATATTTGCATGACGGCAACCAAAATAGAAAGTTTC

Function

GO: NA

KEGG:

id description
K08791 LATS1_2, Wts; serine/threonine-protein kinase LATS1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4135 lncRNA downstream 65924 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 65924 19084980 ~ 19086692 (-) False G3405
TU4132 lncRNA downstream 72951 19079434 ~ 19079665 (-) True G3403
TU4131 lncRNA downstream 74752 19077456 ~ 19077864 (-) True G3402
TU4124 lncRNA downstream 106411 19045807 ~ 19046205 (-) True G3395
TU4209 lncRNA upstream 5921 19175572 ~ 19180511 (-) True G3470
TU4221 lncRNA upstream 186994 19356645 ~ 19357239 (-) True G3482
TU4226 lncRNA upstream 196406 19366057 ~ 19367009 (-) False AMCG00003825
TU4275 lncRNA upstream 274365 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 543184 19712835 ~ 19713052 (-) True G3535
AMCG00003820 mRNA downstream 2454 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003819 mRNA downstream 20764 19119815 ~ 19131852 (-) True AMCG00003819
AMCG00003817 mRNA downstream 54304 19089198 ~ 19098312 (-) True AMCG00003817
AMCG00003808 mRNA downstream 181521 18951252 ~ 18971095 (-) True AMCG00003808
AMCG00003809 mRNA downstream 203956 18944095 ~ 18948660 (-) True AMCG00003809
AMCG00003821 mRNA upstream 11028 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003822 mRNA upstream 32012 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003823 mRNA upstream 114345 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003825 mRNA upstream 192167 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003824 mRNA upstream 218714 19388365 ~ 19390719 (-) True AMCG00003824
TU3909 other downstream 1000235 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1207674 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3560886 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4341285 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5139595 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 255312 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 274365 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 274365 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4359868 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4359868 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile