RNA id: AMCG00003822


Basic Information

Item Value
RNA id AMCG00003822
length 6201
RNA type mRNA
GC content 0.40
exon number 27
gene id AMCG00003822
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19201663 ~ 19240595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATGTACAGGAAATTATACCTTTATACCGTATATGGTGACACCACACAATAAAGTGTATTGCTGTGAAAGTAGTTTAATGAAGGGACTTACTGAATTAATGCAGCCCAACTTCGAGATGTTGCTTGGGCCAATCTGCATGCCACTTGTGGATCGGTTTGTCCAGCTTTTGAAGTATTTCAGAGAAACGATCCTAAATGAGATCAGGAAAGCCCGGGAGCTGTACACCGGCATGGAGCTGGCAGCAGAGCTGGGCCGGATTCAACAGCGACTGGATAACGTTGAGTGCCTATCAGCTGATGTTGTCATCAACCTGCTTCTCTCCTACCGCGATATTCAGGATTACGATTCAGTTGTGAAGCTGGTTGAAACTCTGGAGAAGTTGCCAACATTTGATCCTGTGTCCCACCCCCATGTGAAGTTTCATTATGCTTTTGCACTGAATCGGAGAAACCTGCCTGGGGACAGACAGAAGGCTTTGGCAATAATGTTGCCACTGGTGCAGTCTGAGCAGCAGGTCGCCTCGGACATGTACTGCCTGGTGGGCCGAATCTACAAGGATACGTTTCTAGATTCTAActtcactgacacagagagcagagataGTGGTGCACAGTTTAAGAGGGGATTTGAATCAGAGCCAACACTACACTCAGGGATCAACTATGCAGTTCTTGTCCTGGCAGCAGGACACCAGTTTGACACATCCTTTGAACTTCGGAAAGTTGGTGTGAAGCTTAGTAGCCTCCTAGGTAAAAAAGGCAGCCTGGACAAGCTTCAGAGTTACTGGGATGTGGGATTCTTCCTGGGGGCCAGTATATTGGCCTGTGACAACCTGAGGGTGATCCAGGCCTCTGAGAAACTTTTCAAACTCAAGGCCCCTACTATACTGATATATCAGCATTTCAAAAAACCTTCTGGAGAGCAAGCTGCCCAAAAACAGGAACTAGTGGACTTTTGGATGGACTTTCTTGTGGAAGCCACAAAGAAGGAAGTCTCTTCAGTCCGTTTCCCAGTTTTGATATTAGAACCCACTAAAGTATACCAGCCTTCTTATCTGTCTATCAACAATGATGTTGAGGAGAAGACAGTGTCTATTTGGCATGTAGCTCCAGATGATAAGAAAGGGATTCACGAGTGGAACTTCACAGCTGCCTCCATCAGAGGTGTGAGcgTGTCCAAATTTGACGAGCGCAGTTCCTTTTTATATGTGCTACACAATGCTGAAGACTTTCAGATCTACTTCTGCACTGAACAACACTGTAAGAGGTTCTGTGAGTTGGTAAACAGCATAACACAGGAAGCCTTCAAGAGCCCAGATGAGTGGGAGTGTGAGACAGATGGGCTGGAGTATGACTATGAGTATGATGAGAATGGCGAGATGGTTGTGCTTGGGAAGGGGACTTTTGGAGTTGTATATGCAGGCAGAGACCTGAGTAACCAGGTTAGACTAGCCATCAAGGAGATTCCCGAGAGGGACAGTCGATACTCTCAGCCTCTTCACGAAGAGATTGCTCTTCATAAACATCTCAAGCACAAGAACATTGTCCAGTATCTTGGGTCCATCAGAAGTCTGTCTGCTCTGCTGAGATCAAAGTGGGGGCCTTTAAAGAACAATGAGCCGACAATAGGCTTTTATACCAAGCAGATTCTGGAAGGTTTAAAATATCTTCATGATAATCAGATTGCACACAGAGATATCAAgGGGGACAATGTACTGATAAACACATACAGTGGAGTCCTAAAAATATCAGATTTTGGTACTTCAAAAAGGCTTGCTGGGATCAACCCTTGCACAGAAACCTTTACAGgAACGCTGCAGTATATGGCACCTGAAATAATTGATAAGGGCCCGAGAGGTTATGGGAAGCCTGCTGATATCTGGTCCTTGGGCTGCACCATCATCGAAATGGCCACAGGAAAGCCGCCTTTCTATGAATTAGGGGAGCCACAGGCTGCCATGTTTAAGGTCGGTATGTTCAAAATCCATCCTGAGATTCCAGAGTCCATGTCTTTGGAGGCCAAGGCTTTCATCCTGCGCTGCTTTGAACCAGACCCAGACAAGCGAGCCACCGCCTTCGACCTCTTGACCGATGAGTTCCTCACTGTCACCAGCAGGAAGAAGAGGTCAAAGAACAACTTAACAGccCTTTCAACAGGATCAGAGTACTTGCGCAGTATCTCCCTGCCCGTGCCTGTGTTGGTGGAGGAcacaagcagcagcagtgagtACGGTTCTGTGTCTCCAGACAACGACCTCAGGACAGACCCCTTCATCTTCAAACCCAGGAACAAGTGCCTCAGCGAGAGGGACGTCAAAGGGACCCGGTCTTTATTCTTGAGCATTCCTGTTGAAAACTTTGAGGACCACAGTGCACCTCCGTCTCCTGAAGAAAAGGACACAGGGTTTTTCATGTTGAAGAAAGACAGTGAGAGGAGAGCCACATTACACAAGATCTTGACAGAGGACAAGGAGAAGGTAGTGAAAAACCTGGTGGAAGCCCTGGCACAGGGAACAGAAGAGACAAAGCTGAAAAGACAGCACATTTCCACGCTAGTGGTGAGCCTAGGGGACTTTGTAAGGACTGCAGATCGCAAGATCATTGCCAACACCCTGTCCCTGCTCAAGCTGGAGCTGGATTTTGACAGTTCGGCCATTAGCCAGCTGCAGGTAAATAAAGTGTTGCGAAACCATAACATCAAACCTCACTGGATGTTTGCCCTGGACAATATAATCCGCAAAGCTGTACAGACTGCCATTACCATTCTTGTCCCAGAACTAAGGCCACATTTCAGCCTGGCCTCGGAGAGCGACCCAGCCGACCAGGAGGACGCTGACGACGATGAGGATCCCGGAGACAACACTGCCAAGCAGTCCAGCCGGCAGCCCCCTGTCCGCCATGACGACACCGTGCCCACCTCGGGGGTCAGCACTCTCAGCTCCACGGTATCCCATGAGTCCCACAATGCCCAGCGCTCTGTCAGCATGGAGCTGGGGAGGATGAAATTAGAAACCaacagGTTGTTGGAGGAGCTGctagagaaggagaaggagtaCCAGATCATCCTTCATCAGGTcatagaggagagagagcaggagatcAAACTACTGAGACTGAAATCGGACCCAATAGATGTTCCTGCACCATCTGTTTGTCATCGATATACACACACTGCGGACCACGAGGACCCTGAGCTGACCAAATGGCTAAAAGATAATGATGCCGACGATGATACTATTGAAAGgTTTTTGGCAGAAGAGTACACACTGATGGACATCTTGCATTATGTGACGAGAGATGACCTAAAGagtttaaaattaagAGGGGGTATTCTGTGCAAACTGTGGAAAGCGATCACAGATTATCGAGAGAAACCCTCTTAATTGCTTTATAACCATACTTTCAATTGAGGAGGACTTCCATCAAAACTGAATCAGTATTCTCTTCACAACAcagcactttatttttaatattttttagacCAAAATGCTGACTCTTCTTATTCCTATGAACAATATTCTGTGGAGAAAAACGAATGTATAGATTTTTCAGATAAAAGAAATTGAAACCCCAGATGCCATTATTTCAAGATCTAGATGTTTTCAATTGTAGAGCACTGAGACTGAAACCACCCCCTGAGGTCAGCAGTCTGATGgtgactaaatatttatataacgATATACAAACCAATGGTTTTTATTACACCATCCTTTATACATCAATTATAGCAATCAATTACTTCTTATTCAATGTATATAAGCATACACATTTCTATAACTCTGAATTAttatgatatttacattttgtctttaGGGCTATTATcaatcatttacatttactggAACTAAGACTGAAAGTGTTTTTAGGACCACAAAGCTTGAAATTAGTTTTTGGTACAGATCTCAAGGTAAGACATTTTCAGTGCTATGTTTGAGGCTTGATTCTCCTTTTAGAACTTTTGGAAATACGAATATcttccattttattattcattagaTGAATTATGTACAAATTGCAAAAATGACAACATAAAGATTTTTTACCAAATTGATCTAAATTAGTTACTTTTTGGAATTTCTTcttacatgttttcatttccagTGTGTAGtcagtgttttgaaaaaaatatttgactgtTATTTTTCCATGGGAAtccacaattaattaattaattctgcagttcagtttttaaatattctacAATTAAGCTTGGTAACAAGGGCAGGATTGTGTcaaaaaatgtcagtttatataaatgcatttttacaattagttaaacaacaaaatgtggccAAGTTAgatcaataaaaaaatcaatagtaAAAATATGACTTActaaaaaatttaattaaatagattaaCTAAGTGACTCAGTACAATCTGTCTCAGTACTTTAGTGCATTACACTAAGAAAGCTTATTAGCACAACAGATAAAATGCAAAAGATTGCGTTATTACAAGAAAATATAGCATTATTTCACAGTAattattgcattaatgagaTATTATTCAGTTAATTTGCAATAATTATCATGTTAATATGAGATGatgttgcattattttgcaataataattgcattataCTTGCAGTCTTTCCTTGAATGGCAAATAGAATAGTTTCAGtttaataaactataataatatttttgaacACCCATGCAGTTTCAAAAGAACAAGGAAAGATTGCAGGTGTTCAGATTCAAGACTCGGCGCATGATCTTGTAAATACTCATATTGCAACTTTACATAACTGTTCCAGTCTCTAGAAAAGAGCTTAGAAGCTACATTTTCCCTGGAATTTTACATAGGTCCGGTTGTAAGCAATGACAGGGCCGGGGGACTTGGACACATAAGCATTCTCCACATAGCTTcccaaaacattaatatttgtatatccCAATATTCGTATTCCTCCATTTAAGTCTAAATCTAGATCTagttttcatttacaaatgcaGCTCTATATGTTTGTAAGCGACCTTGTTGAAGATGGTTTGAGATTTGATATTCAACTTCATGATGAACACAACACCagcactgcttttattttacattacccCTTCAATACTGCTAGGAATATTTGCCAAAGGGCCATTCAAAGTTTGCAAACTACAAGAAAGGTCCTACACTGCAGAATACCATGTcatttgttataaataataaactcacAAAGTTTTGATGTTTTGCTCACTCAAACCCTAGACCATAACCAATAAAGTAAGCAATCTTATAATTGTCTATATATCTATTATTCCCAACCAAATATCAAGACAAATAGCTGAGATTTCAAGTCCTGGTGTAATGGTTATGTGTAATAGAAAGTACAGTACAAAGTaacaaaattgttttaatacaagAATTATTGCAAGGTAATACAATATTATCtcaaattaacacaattaaactCACTGTGGCACTAATAACACTGCttataaagtaaaaacattaaatctgCACTCATTAGCTTAGTGACAAAGTCATTTCatagacaaaaaacaaaatatataaaactttagTATAATCTTTTTTTACTGGCTGACACTGGAGGCCCGTGTTGTTTTGAGCTCACACTCAGAATTCCAAAGCAAAATTTCATCTTTAAGTTGAATCCAAAATTAAAGGCTATTAAATTGCAGAATGCCAATAATAAAGTTAGTTAATGTATGATAAGTTAGATAACATACTGCACACCGGGTCTCCATGCAGGAATAAAACGAGCCCTGTGAACAGAGGCCCTTCACACATCATTCCCCACTGAATAAATCTGCCTCGAGAActtctatatttttattatgtgacAATGGAATAAAACTATGAGAACTAATGTTTATATAGCAtgtttacatatacataaatgtttgtgtgtgtgtgtttttatcaaGGTATTGTGCATATTCACAATTTAAAGTTTAGTTGGGCCATTGAAAATATACATGGgggaatacatttttgtattatgcaAATAGTGTGAGTTTTGCTATTTACTTCTTGGTatttactgtgtgtatatatatacagatatacatatacagctctggaaacaattaagagaccactgcaaaatgatcagtttctctggttttactatttataggtatgtgtttgggtaaaatgaacattgacaacatttctcccaaattcctaataaaaatatgaatggaatggaatggctgccatacatgtagagatggtGATTTAAg

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04426 MAP3K5, ASK1; mitogen-activated protein kinase kinase kinase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4209 lncRNA downstream 21152 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 114971 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 114971 19084980 ~ 19086692 (-) False G3405
TU4132 lncRNA downstream 121998 19079434 ~ 19079665 (-) True G3403
TU4131 lncRNA downstream 123799 19077456 ~ 19077864 (-) True G3402
TU4221 lncRNA upstream 116050 19356645 ~ 19357239 (-) True G3482
TU4226 lncRNA upstream 125462 19366057 ~ 19367009 (-) False AMCG00003825
TU4275 lncRNA upstream 203421 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 472240 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 659374 19899969 ~ 19900381 (-) True G3552
AMCG00003821 mRNA downstream 4987 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003818 mRNA downstream 32012 19152616 ~ 19169651 (-) True AMCG00003818
AMCG00003820 mRNA downstream 51501 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003819 mRNA downstream 69811 19119815 ~ 19131852 (-) True AMCG00003819
AMCG00003817 mRNA downstream 103351 19089198 ~ 19098312 (-) True AMCG00003817
AMCG00003823 mRNA upstream 43401 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003825 mRNA upstream 121223 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003824 mRNA upstream 147770 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003829 mRNA upstream 234294 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003830 mRNA upstream 382014 19622609 ~ 19624841 (-) True AMCG00003830
TU3909 other downstream 1049282 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1256721 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3609933 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4390332 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5188642 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 184368 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 203421 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 203421 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4288924 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4288924 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile