RNA id: AMCG00003824


Basic Information

Item Value
RNA id AMCG00003824
length 675
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00003824
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19388365 ~ 19390719 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTGGCCAAACTGCTTTAACGCCCTGGTTTGTATTATAACTTTTGAACTCTCCGTTACGTTGTGTCAGTACAGAAAGGGGTTTAGGCACTCCGCAGTGTTGGATGAGCATGGCAAATACCACATGAGATGGAAATACGATGAAAATACCATCACTTTCGAAATCCAAGTGGAAACCAATGGATATATTGGATTTGGCTTGTCTCCCAATGGAGCAATGGCGTTATCAGACATTGTGATTGGGGGAGTGGAAAAAGGGAAGCCCTACTTACAGGATTATTTTGCAGACACAAGCAGACAAGTCCTAAGAGATGATCAACAGAATTACCATCTGGAATATGCATCAGAAAATAACACCCACACTGTCCTGGCTTTCAGCAGAGATCTGGACACTTGTGACAGAAATGACAAACTTATTACGGAGAGCACTATAAGAGTGATATGGGCTTATCATAATGAAGATTGTGGACTTGCTGTACCGAAATACCATGGAGTGAACAGGGGAAGGAAGAGCTTGCGTTTACTAAACCCAGGAAGTTATGCTTCTATCCCATCAGAGACTACCTTCTTTGACCTAAGGAATCATAACATGCTAGTGCCTTTTAAGGATACAACCTACTGgtgtaaactatttaaaatcccCAAACTGGACAGAAAACACCATGTCATCAGG

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4226 lncRNA downstream 21356 19366057 ~ 19367009 (-) False AMCG00003825
TU4221 lncRNA downstream 31126 19356645 ~ 19357239 (-) True G3482
TU4209 lncRNA downstream 207854 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 301673 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 301673 19084980 ~ 19086692 (-) False G3405
TU4275 lncRNA upstream 53297 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 322116 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 509250 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 511363 19902082 ~ 19903092 (-) True G3553
TU4307 lncRNA upstream 517311 19908030 ~ 19908341 (-) True G3554
AMCG00003825 mRNA downstream 15140 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003823 mRNA downstream 101182 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003822 mRNA downstream 147770 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003821 mRNA downstream 191689 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003818 mRNA downstream 218714 19152616 ~ 19169651 (-) True AMCG00003818
AMCG00003829 mRNA upstream 84170 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003830 mRNA upstream 231890 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003831 mRNA upstream 286410 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003834 mRNA upstream 398674 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003837 mRNA upstream 686396 20077115 ~ 20078155 (-) True AMCG00003837
TU3909 other downstream 1235984 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1443423 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3796635 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4577034 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5375344 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 34244 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 53297 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 53297 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4138800 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4138800 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile