RNA id: AMCG00003825


Basic Information

Item Value
RNA id AMCG00003825
length 582
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00003825
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19361818 ~ 19373225 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGATCCTTTGATTCAGAGTGGGCATAGGAATTTAGTTCACCACATTCTGCTGTACCAGTGTGATATCAAACTGAATGAGAGTGAACTTGACTTGGACCATGAGTGCTACCATCCCAACATGCCTGACTCGTTCTTCACATGTGAAAGTGTTGTCTTTGCTTGGGCAATTGGAGGAGAGTCACTAGATCTCGAGATGCCAACAGGAATCCGTGTGTTTGCTGTGCTTTTGCACTCTCACCTTGCTGGTCGAGCTCTGAGAACAAGACACTTCAGAAAGAACAAGGAACTGCAGCCTCTAGCTTATGACAAtgagtttgattttaattttcaagAGTTTCAGTATCTCGAAGAAGAAAGATTAATATTGCCTgGAGACAATTTGATTACTGAATGCAAGACCTGGCCTTTTATAATCAAAAGCCCCAGGAAGTACAACAATCTTTCGTTCATGGAAGCCATGGATAAATACAGGTGGtcaaaaaaaaggggaaaagaaTTTAATGAACTTGTAGTTCGTCTGCCGATGAATGTGAGATGTGCCAAACATAATCAAGAAGAGTGGTCAGTGAGTATCAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4221 lncRNA downstream 4579 19356645 ~ 19357239 (-) True G3482
TU4209 lncRNA downstream 181307 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 275126 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 275126 19084980 ~ 19086692 (-) False G3405
TU4132 lncRNA downstream 282153 19079434 ~ 19079665 (-) True G3403
TU4275 lncRNA upstream 70791 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 339610 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 526744 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 528857 19902082 ~ 19903092 (-) True G3553
TU4307 lncRNA upstream 534805 19908030 ~ 19908341 (-) True G3554
AMCG00003823 mRNA downstream 74635 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003822 mRNA downstream 121223 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003821 mRNA downstream 165142 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003818 mRNA downstream 192167 19152616 ~ 19169651 (-) True AMCG00003818
AMCG00003820 mRNA downstream 211656 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003824 mRNA upstream 15140 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003829 mRNA upstream 101664 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003830 mRNA upstream 249384 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003831 mRNA upstream 303904 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003834 mRNA upstream 416168 19789393 ~ 19789825 (-) True AMCG00003834
TU3909 other downstream 1209437 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1416876 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3770088 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4550487 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5348797 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 51738 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 70791 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 70791 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4156294 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4156294 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile