RNA id: TU4226


Basic Information

Item Value
RNA id TU4226
length 291
lncRNA type sense_over
GC content 0.35
exon number 2
gene id AMCG00003825
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19361818 ~ 19373225 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCACTAGATCTCGAGATGCCAACAGGAATCCGTGTGTTTGCTGTGCTTTTGCACTCTCACCTTGCTGGTCGAGCTCTGAGAACAAGACACTTCAGAAAGAACAAGGAACTGCAGCCTCTAGCTTATGACAAtgagtttgattttaattttcaagAGTTTCAGTATCTCGAAGAAGAAAGATTAATATTGCCTgGAGACAATTTGATTACTGAATGCAAGTATAATACCAGAGATCGGAAAAATATGACTTGGGTAAGAAAATTGACTAACTTAGTATCAGGGTTAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4221 lncRNA downstream 8818 19356645 ~ 19357239 (-) True G3482
TU4209 lncRNA downstream 185546 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 279365 19084704 ~ 19086692 (-) True G3405
TU4138 lncRNA downstream 279365 19084980 ~ 19086692 (-) False G3405
TU4132 lncRNA downstream 286392 19079434 ~ 19079665 (-) True G3403
TU4275 lncRNA upstream 77007 19444016 ~ 19506753 (-) False G3523
TU4288 lncRNA upstream 345826 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 532960 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 535073 19902082 ~ 19903092 (-) True G3553
TU4307 lncRNA upstream 541021 19908030 ~ 19908341 (-) True G3554
AMCG00003823 mRNA downstream 78874 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003822 mRNA downstream 125462 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003821 mRNA downstream 169381 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003818 mRNA downstream 196406 19152616 ~ 19169651 (-) True AMCG00003818
AMCG00003820 mRNA downstream 215895 19142919 ~ 19150162 (-) True AMCG00003820
AMCG00003824 mRNA upstream 21356 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003829 mRNA upstream 107880 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003830 mRNA upstream 255600 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003831 mRNA upstream 310120 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003834 mRNA upstream 422384 19789393 ~ 19789825 (-) True AMCG00003834
TU3909 other downstream 1213676 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1421115 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3774327 15515673 ~ 15591730 (-) True G2665
TU3027 other downstream 4554726 14810786 ~ 14811331 (-) True G2500
TU2876 other downstream 5353036 14009458 ~ 14013021 (-) True G2373
TU4265 other upstream 57954 19424963 ~ 19425366 (-) True G3517
TU4274 other upstream 77007 19444016 ~ 19444743 (-) True G3523
TU4276 other upstream 77007 19444016 ~ 19506753 (-) False G3523
TU5013 other upstream 4162510 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4162510 23529519 ~ 23533882 (-) True AMCG00003893

Expression Profile