RNA id: AMCG00003829


Basic Information

Item Value
RNA id AMCG00003829
length 1431
RNA type mRNA
GC content 0.35
exon number 4
gene id AMCG00003829
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19474889 ~ 19478369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctggataagggcgtctgccaagaaataataataataataataataatgtaaaggaAAAGCTACTTGTAACCATAATCCTTAACACTAACTAGTGTATGATTGTTCTTTAAACCAGGTAGAGACGTGTGTCATGTTTATAAGATATTTGATaatttttgccttttgtttcAGCGCCAGAGAAAGATACAAAAAGATCGCCTTGTTAatgatttttcaaatacattggccaTCTTCCAAAAAATTCAAAGGCAAGCTGCTCAGAAAGAGAAGGAATTTGTTGCCAGAGTGCGTGCCAGCTCAAGGGTATCTggTGGCTTTCCTGATGATGGCTTCAAAGGAGGAAATGTGTTACCCTCTGAGAGTGAACCCCCCTCCTATGTACAAACCCAAGCAGATGCCATTACAGAAGAGGATCTTATGCTTatcaaagaaagagaaaccacCATCAGACAACTTGAAtctGATATTTTGGATATTAATGAAATCTTCAAAGATTTGGGAATGATGATTCACGAGCAGGGAGACACTATTGGTAAGACTCTGTTTTACTGTCTCGATctatttaaaagcagaaatgatCATATGGTATGTTACAGACAGTTCTTTCTCATTTTGTAATGCagttatatttctaaaacatatattattactagaaccagttatttttatttattttaaaattgatatatttttgaagAGGGGGTAATGATTTAAAGATTTTCATGTGCAAAGATCTTGTGGTTTCTCCAGTTCCAGATTCCTTTAAATGTGGAGTTGTGATCTGAAACTAATTTCTTGCAAAGATACATTTACCCAGACATTGTAGTCAGAGCAGGTTATGTGCAGTGTTCCGTAATTTCCTGTAATTATCTTCAGTTTACGGAGATACATACAGTAAAGGTGAAGCGAaccattatattaaatataaaaaggtaTTTAGAAGAATGAAAACAGTCTTCTTCTATATTCATTTATTGACCTTCATGTAACTTAAATGTAGATGCATTTTCATAACTGCTCTGGTAAGTTGAGTTAACCCTGAGCATTGTGCTTTGTATTCtacatttcacattgaaaaCTAAATGCAGACTTCACAGTAAACTAACTTTGGACAGACTGCATGATTTAATTACTAGAATTCTGTGTGGAATCGGTTCAGATGGCCCCCTGAGAGAGCCACACTTGCACATACACAATGAAGTGTCAGACTGACTGTTGATGATGTCACAGTCCTAAATGCAtcaattaaatgtgttgaacaaacagatctctaattgcttttaataaacCCCACTGAGAATTAAGGGTCCTCAAAGAGCTGGCCTGCGCCCTTTGTTAGAGAAAAGAGTCCTGTGGggtttttaaatttattttgaactttcTCCCTGAGTTTGTTGAAGTAGTTCTGCTAATATATGTAAACCATCAAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4226 lncRNA downstream 107880 19366057 ~ 19367009 (-) False AMCG00003825
TU4221 lncRNA downstream 117650 19356645 ~ 19357239 (-) True G3482
TU4209 lncRNA downstream 294378 19175572 ~ 19180511 (-) True G3470
TU4135 lncRNA downstream 388197 19084704 ~ 19086692 (-) True G3405
TU4288 lncRNA upstream 234466 19712835 ~ 19713052 (-) True G3535
TU4305 lncRNA upstream 421600 19899969 ~ 19900381 (-) True G3552
TU4306 lncRNA upstream 423713 19902082 ~ 19903092 (-) True G3553
TU4307 lncRNA upstream 429661 19908030 ~ 19908341 (-) True G3554
TU4341 lncRNA upstream 550494 20028863 ~ 20029308 (-) False G3584
AMCG00003824 mRNA downstream 84170 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003825 mRNA downstream 101664 19361818 ~ 19373225 (-) True AMCG00003825
AMCG00003823 mRNA downstream 187706 19283996 ~ 19287183 (-) True AMCG00003823
AMCG00003822 mRNA downstream 234294 19201663 ~ 19240595 (-) True AMCG00003822
AMCG00003821 mRNA downstream 278213 19180679 ~ 19196676 (-) True AMCG00003821
AMCG00003830 mRNA upstream 144240 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003831 mRNA upstream 198760 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003834 mRNA upstream 311024 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003837 mRNA upstream 598746 20077115 ~ 20078155 (-) True AMCG00003837
AMCG00003838 mRNA upstream 1025730 20504099 ~ 20512976 (-) True AMCG00003838
TU4274 other downstream 30146 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 49523 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 1322508 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 1529947 17942577 ~ 17944942 (-) True G3181
TU3242 other downstream 3883159 15515673 ~ 15591730 (-) True G2665
TU5013 other upstream 4051150 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 4051150 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 4051150 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 4785538 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 4809762 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile