RNA id: AMCG00003836


Basic Information

Item Value
RNA id AMCG00003836
length 414
RNA type mRNA
GC content 0.46
exon number 1
gene id AMCG00003836
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20333123 ~ 20333536 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTTCTACTGCTCTCTTCTGGAGCGAGTTATGATGCCACAAGAATTCAACACATGGAGTGAAGTTATGGAATATGACCTGACAGAGGAGCATCATCTGCCGCTTGAGGTTGTGGACTTCGGGGTTGAGTTCTGCCTCGCCCTCTCTGAAGCCATAGTAATAGACCCAGAAATAGTTCAGGACATGAAATCCCACTGCAGAGACTACATGGTAGCTCTTATAAGAGAGATCAAGATGAGACTTCCTGATAACATCAAACAACTGGAGGCCCTAAAGTCTCTTTCCCCAAGCATTGTGCTCAGCTGCAAGAAGCCACATCTTGATGTTCTATCCTTCTTTCCTCTTTTCAAAGGAGATCCAGGAAAGGCTGACCAACAGTGGAGCATGATCCACACTCAAGACACTCCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4316 lncRNA upstream 74100 20239654 ~ 20259023 (+) True G3563
TU4315 lncRNA upstream 92969 20094038 ~ 20240154 (+) True G3562
TU4303 lncRNA upstream 434580 19898266 ~ 19898543 (+) True G3550
TU4302 lncRNA upstream 435213 19897585 ~ 19897910 (+) True G3549
TU4301 lncRNA upstream 435588 19897110 ~ 19897535 (+) True G3548
TU4339 lncRNA downstream 57654 20391190 ~ 20419930 (+) True G3582
TU4381 lncRNA downstream 254555 20588091 ~ 20588564 (+) True G3620
TU4397 lncRNA downstream 443523 20777059 ~ 20801146 (+) True G3635
TU4413 lncRNA downstream 502201 20835737 ~ 20860294 (+) True G3648
TU4432 lncRNA downstream 570036 20903572 ~ 20908517 (+) True G3661
AMCG00003835 mRNA upstream 199768 20132773 ~ 20133355 (+) True AMCG00003835
AMCG00003833 mRNA upstream 388106 19944010 ~ 19945017 (+) True AMCG00003833
AMCG00003832 mRNA upstream 389286 19933174 ~ 19943837 (+) True AMCG00003832
AMCG00003827 mRNA upstream 701676 19630470 ~ 19631447 (+) True AMCG00003827
AMCG00003826 mRNA upstream 882850 19448872 ~ 19450273 (+) True AMCG00003826
AMCG00003844 mRNA downstream 954924 21288460 ~ 21296218 (+) True AMCG00003844
AMCG00003843 mRNA downstream 980538 21314074 ~ 21333224 (+) True AMCG00003843
AMCG00003845 mRNA downstream 1014691 21348227 ~ 21438679 (+) True AMCG00003845
AMCG00003846 mRNA downstream 1106578 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003847 mRNA downstream 1158348 21491884 ~ 21535758 (+) True AMCG00003847
TU4227 other upstream 963857 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 2180809 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 2190490 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 2649135 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 4293483 16035663 ~ 16039640 (+) False AMCG00003712
TU4541 other downstream 1215665 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 1412314 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 1589100 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 3376702 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 4349864 24683400 ~ 24683920 (+) True G4360