RNA id: AMCG00003837


Basic Information

Item Value
RNA id AMCG00003837
length 735
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00003837
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20077115 ~ 20078155 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATAATGGAATTCACTCAATTAAAGGAGACAGAAAAGTTACTCTACTGCTATCAGTCTAtttttcatcTGATATTCATTGCTATTGATCGTTACTATGCTGTGTGTGATCCCTTACTTTACACCAGTAAAATAACAATGCATGTGGCATGGTTCTTTGTTACAATTAGCTGGGTTGCTGCAATAGTGTACATAGACACACTAATATATTTTGAGGGAAATACTGAAGGCATGGAAGGTTTTGATCCCTGTCCGGGGGACTGCATTATTGTCTTTAATGCTGTGTGGGGCACTCTTGATACAATGCTTACATTTTTCTTACCATGTTCTGTAATGCTCTGTCTTTACACAAAGATATTTACCGTGGCAAGAAGGCATTCAAGAGAAATCAGTACAATGGAGGACCAGATGCAATCAATAGAGGGCAAAAAAAGACTTGCTCCTCGCAGTAAAGATAGGAAAGCAACTAAAACATTGTCCATTGTTATTGGAGTGTTTATTCTTTGCTGGTTACCTTACTTTGTTAATAGTGTAATGGATCCCTATGTACATTCTTCAACTCCTCCAATTGTTGTTGATGCTCTGCAGTGGCTGGGATATTTCAATTCTGGCTGCAACCCAATTATCTATGGCTTTTTTTATCCTTGGTTCCAGAAAGCTCTAAACCTCATTCTGacctgtgaaatatttaatccaGAGTCCTCTTTAATCAGTGTATATTCAGGAAGTCACTAA

Function

GO:

id name namespace
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4341 lncRNA downstream 47807 20028863 ~ 20029308 (-) False G3584
TU4307 lncRNA downstream 168774 19908030 ~ 19908341 (-) True G3554
TU4306 lncRNA downstream 174023 19902082 ~ 19903092 (-) True G3553
TU4305 lncRNA downstream 176734 19899969 ~ 19900381 (-) True G3552
TU4288 lncRNA downstream 364063 19712835 ~ 19713052 (-) True G3535
TU4345 lncRNA upstream 160358 20238513 ~ 20239078 (-) True G3587
TU4361 lncRNA upstream 289850 20368005 ~ 20372943 (-) True G3602
TU4367 lncRNA upstream 313028 20391183 ~ 20419999 (-) True G3607
TU4377 lncRNA upstream 497857 20576012 ~ 20576914 (-) True G3616
TU4378 lncRNA upstream 501209 20579364 ~ 20579571 (-) True G3617
AMCG00003834 mRNA downstream 287290 19789393 ~ 19789825 (-) True AMCG00003834
AMCG00003831 mRNA downstream 399347 19677129 ~ 19677768 (-) True AMCG00003831
AMCG00003830 mRNA downstream 452274 19622609 ~ 19624841 (-) True AMCG00003830
AMCG00003829 mRNA downstream 598746 19474889 ~ 19478369 (-) True AMCG00003829
AMCG00003824 mRNA downstream 686396 19388365 ~ 19390719 (-) True AMCG00003824
AMCG00003838 mRNA upstream 425944 20504099 ~ 20512976 (-) True AMCG00003838
AMCG00003840 mRNA upstream 811977 20890132 ~ 20898701 (-) True AMCG00003840
AMCG00003842 mRNA upstream 830235 20908390 ~ 20920636 (-) True AMCG00003842
AMCG00003841 mRNA upstream 872280 20950435 ~ 20959586 (-) True AMCG00003841
AMCG00003839 mRNA upstream 951924 21030079 ~ 21042693 (-) True AMCG00003839
TU4276 other downstream 570362 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 632372 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 651749 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 1924734 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 2132173 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 3451364 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 3451364 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 3451364 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 4185752 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 4209976 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile