RNA id: AMCG00003844



Basic Information


Item Value
RNA id AMCG00003844
length 281
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00003844
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21288460 ~ 21296218 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCTATTCCCTGCAGTGCTGAATCTAGCATCAATGGCTAACATCACCACCAATGCCACCTGTGGTCAAAGAGGTCCTGAAATGTACTGCAAGTTGGTTGAACATGTACCTGGGCAGCCAGTGAGAAATCCACAATGTCGTACGTGTAACTTAGCCAGTAATGAGCCATATGAGCAGCATCCTATCACATATGCCATTGATGGTACAAACAGATGGTGGCAAAGTCCGAGCATCCAGAATGGCATGGATTATCATTATGTCACAATTACTCTGGACCTTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4463 lncRNA upstream 198206 21089595 ~ 21090254 (+) True G3690
TU4443 lncRNA upstream 360658 20925812 ~ 20927802 (+) True G3670
TU4439 lncRNA upstream 375472 20912142 ~ 20912988 (+) True G3666
TU4432 lncRNA upstream 379943 20903572 ~ 20908517 (+) True G3661
TU4413 lncRNA upstream 428166 20835737 ~ 20860294 (+) True G3648
TU4545 lncRNA downstream 299638 21595856 ~ 21598430 (+) True G3754
TU4549 lncRNA downstream 304414 21600632 ~ 21600860 (+) True G3757
TU4559 lncRNA downstream 436273 21732491 ~ 21732699 (+) True G3767
TU4562 lncRNA downstream 454309 21750527 ~ 21759799 (+) True G3770
TU4577 lncRNA downstream 594305 21890523 ~ 21901648 (+) False AMCG00003853
AMCG00003836 mRNA upstream 954924 20333123 ~ 20333536 (+) True AMCG00003836
AMCG00003835 mRNA upstream 1155105 20132773 ~ 20133355 (+) True AMCG00003835
AMCG00003833 mRNA upstream 1343443 19944010 ~ 19945017 (+) True AMCG00003833
AMCG00003832 mRNA upstream 1344623 19933174 ~ 19943837 (+) True AMCG00003832
AMCG00003827 mRNA upstream 1657013 19630470 ~ 19631447 (+) True AMCG00003827
AMCG00003843 mRNA downstream 17856 21314074 ~ 21333224 (+) True AMCG00003843
AMCG00003845 mRNA downstream 52009 21348227 ~ 21438679 (+) True AMCG00003845
AMCG00003846 mRNA downstream 143896 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003847 mRNA downstream 195666 21491884 ~ 21535758 (+) True AMCG00003847
AMCG00003854 mRNA downstream 561272 21857490 ~ 21862799 (+) True AMCG00003854
TU4227 other upstream 1919194 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3136146 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 3145827 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 3604472 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 5248820 16035663 ~ 16039640 (+) False AMCG00003712
TU4541 other downstream 252983 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 449632 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 626418 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 2414020 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 3387182 24683400 ~ 24683920 (+) True G4360

Expression Profile