RNA id: AMCG00003856


Basic Information

Item Value
RNA id AMCG00003856
length 3912
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00003856
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21970496 ~ 21981590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGAGCCCAGATCAGCTTCCCAGCAGTGTCAAGTGTGCATGTGCTCAGTTATTCATGAATTGCGCCTGAGAGACGCCTGGAAAACACACTGGCTGATGTGGCTGCACTTCTCTAGCGGGACGGGGCACCTTCGTATTTCGCTGAAGACCAGTTTTGTACAAAACGATGCGGAAATAATCCCGGATGACTTCAATgatctgtgtggagtttgcatgaaATGCTGGGACAAAGATTCCTAACTACTATATTCTTTGTAACACTACAGACTACAGACATTATCTATGGATCTGCTGTACCTCTGCCACGTGAAGTAGACTTCAAATCTTATAACCTGAGGAATGTTGTTGAATGGATGCCAGGAGACGGAGCTGACAATGAGACGCgatacacagtacagtatgcAATCTATGGAGAAGAGAATATGGGAGATGTGATGTGGAGGGTTAAGAAGAAATGTCAGAATATCTTGAATACGTGGTGTGACCTTTCGAACGAGACTAGCGACTTGGAAGAGAATTACTACGCAAGGGTTAAAGCGGTTTCTACTATTGGCTCTTCACAATGGGCGAACACGAAGAGGTTCAATCCAAAGTTAGACACCACCTTTGGACCCCCGCAGTTAAAAGTGACAGTACGCGACAAAACCATTAATATCAAGGTAAAGGGACCAATGAGATGGAGGAGTAATAAGAATGGAAAGGCAGTCTCCATGTTAAAATACTACCCTCAGATGACGTACAAAATATGTgtccaaaaatacaaaacaaataattcgtggAACTATCTTCTAGAGAACAACTCGATGGAATTGAGCATGTTGGAGTACAgtacacagtactgtgtgtttgCTAGGTCACATTTACCCTTAGCCTTAAAGAGTGACCCTTCTGAAGTGGTCTGTGTGTCCACTGCCAAAGatCCCTTTTTCGACTGGATGGTGTTTATTTTGACAGGATGTGTCTTGCCAATAACGATTGCCCTGTTTCTTCTCATTTTGGTCGGATGTCTAATATACCAGTATGTTTTTGGCAAAAAGCAGAAACAACCCCCAAATCTGttgttgCCACATCATCGTGAACATGAGGCAAAGTTTATGTTTTTTCCTCAGGACTTTACAGTGAATATTATCAACATTAATGGCATAAATAAGGGTGATTTTGATTCAGAATTCATCAGTCAGAAGCTCTTTGGGACTGCACCTGCCTGCTTTAACAAACTGAAAGAGGAGCTGCTGGCAGTGGGGGGTCCTGTGACCTACACATCCCAACTTCTAACAAGTCAAACAAGTAACAGACCCCACAATATATTGAATCCAGACATTCAAGAAAGGGCGACGGGAGTGTGTGACGATTTTGAATATGCAATGGTTCTGAAGGCGCAGGCATCCTTTGAGGAGAAAGAAAGTGTATCAGACAGGTGTACCTCCAATGATGTAGATCCCTCTGCAGTCAGCCACAACCAAGCATTAAACCAGGGGGCTGTGAAAGGCTCCGCACCACCAGAGGAAGCATTGCTGGGTGGACCAGAGCCAAACGCATACAAGCAGCAGGCCACTGAGGTGCGCTGTGAGGCAGACTCAGATGCAAGGAATATCTCGTGGACTTTCCCAGTGGTGGAAGCAGAAAAAGAGGAATCTATTGTTGTGGACTGGGACCCCGAGTCCTGTAGGTTACATATTCCACTTATTTCTGCATTTGAGAAAGAAATAGTTGAAAGGGAAGAGGAAGAGCCAGAATGTGACTGGTGGGAAATGACAGAGATGTTGCCAAAAGTCTATATAAGGCAGTCTTCAGAGGATTCTTGTGAAAGTGAAGACCACCTGAGAAGGCTAGTTAAAGACTGGGGCCTGCATGTCAACATGGAAGAATAAGATGTCCTGGGCTATTATAAGGGAAAGCATTTCCTCTGGGATATTGTTTGagattttgaatatttacatctgctaaattaaatgaaatctaACTTCTAGAAGTATAGGTAGGTATTTGTGTACCCAAAACctccaaaaatgaaaacattataatcTGTTCATAATCAtgagatatatttttgtatatgtatgtatatatttacaacattttacaatttaaagtaattacaCAAAGGAAGGAATTCAATCTGCTTGTGTTTCTGCTAAGACCCTTCAgggcctaataataataaaaaaatgccatAGTGGTACTAATTGTTCTTTTAATCTTGATTGATTCCTCAacataaatgtttcaaaagtGACTCCCAAGATGAATCATTGTAAATTTGTACTTCTATGGATTATGGCAATCTGCTTCTAACCATTTAAACTTTTGCTATGGGATTTGGAGAGTTAAAATCGTTAGAGAGATAGGATACTGCGCACGCTTCATTATTCAGTTGGTAGTATCTGATAAAATCAAACCTGTATTGAGGCAGATAAGCAAGTTTTAAAACAAGccaataattcaatatttcttAACTTGACCTTATAAAGTCCAGAAATGCACAATAACAAACTTACAAGAATGGAAAATGTAAGCTTGAGACGTTACATCAAAGGGCCTGATTTTTGGAGAGCAGATAAACATATTTTAGCAATCTCCATTGTTGAAAGAGCAGgcctttaaaatacatatactgcATCGTGGCCCAAAGGTTGTTATGAATAGTAGGCTACAGTTAGAGTAGATACAAATCTTCGCAAGTAAACTTTGCCAAATGTTTCCACTGATTTCttgcaaacaatattttatggaatatctgtaaatgtctgtttatatatgtatatttttataaacatcCACATATCATTTTACTTTGCTGAGCAGAACAATAACAAGGTATATGTGAAAACAATGAATTTGGaaaacatacatagatacagTATTAAACTTTCCACTCATTGCAAGtttgaatatttttgttgtgaagtattaatgaagaaaaagcaaTGCAGCATTGaatcatttttcactttttgttttatgaatgttGCTCTGTGGTTTACTGTGTTCTTCTGTGTGCCGATaatatgaagaaaacatttttgatttgagGTTAAAGTGGTCCATGTTTTGAGCATGCGTCTAAATATATCCTGTTTGGGCATTACTATACAAACCACATGGTTGGTGTACATCCTTAACAAATGATCAAGTCTatgctttttcttctttatatataCTTGGCTAATATTGGTTTGCACCTCACCAAGATTTAagtaattttatataaaaaataaaaataatgtgtcattttgcattctcattttttaattattattattattattattattattattattatatgaaatacAGTGTGTATGGCAGTGCTGCCCAAACCTAATCCTTGAGGGCCCCTCTCtaacaggttttataggtaacctTTAATTATCCACTTCTAAACACCtggaaccatttcaatgtgatcaattaagcaggtgatttgtgaaattaagttttataaagaaaatgaactaccCTATTCAACCCTCAATGACCAaaattcccttaattgaacaagttaattgcttaattgatcagtaACTTCCATGTGGTTCCAGTCTGTTGAAATTAGCGATTTAGGGTGACTGAGAAAACTTACTGGATAGGGGCTCACAGGACCATTTTGAGCACCACTGGTGTAATTGAAACTAATCAGTTATATACATGGTGTCATATTACAATTCTTTAGTTTGCAAAACACTTCAAggatttattcttgtttttcttcttctcatatGCTCAATGTATTGTAAAGGATattgtgtaaagaaaaaactaCAGTAGACAAATGAAATGTATACCATGTGCTTTCATGATTATTAtgagaaataaactaaaatgttaaagtgcttaattgtatgtttttttgaaaTACATCTACATCTAACCTATAGCTTTCAGGGCTTCTAACCCTGGCATTTACATCTg

Function

GO: NA

KEGG:

id description
K05136 IL20RA; interleukin 20 receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4577 lncRNA upstream 68848 21890523 ~ 21901648 (+) False AMCG00003853
TU4562 lncRNA upstream 210697 21750527 ~ 21759799 (+) True G3770
TU4559 lncRNA upstream 237797 21732491 ~ 21732699 (+) True G3767
TU4549 lncRNA upstream 369636 21600632 ~ 21600860 (+) True G3757
TU4545 lncRNA upstream 372066 21595856 ~ 21598430 (+) True G3754
TU4660 lncRNA downstream 95402 22076992 ~ 22077458 (+) True G3845
TU4682 lncRNA downstream 188750 22170340 ~ 22172105 (+) True G3863
TU4690 lncRNA downstream 201653 22183243 ~ 22184811 (+) True G3871
TU4697 lncRNA downstream 215724 22197314 ~ 22200678 (+) True G3878
TU4705 lncRNA downstream 243128 22224718 ~ 22225101 (+) True G3884
AMCG00003855 mRNA upstream 11511 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003853 mRNA upstream 68631 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003854 mRNA upstream 107697 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003847 mRNA upstream 434738 21491884 ~ 21535758 (+) True AMCG00003847
AMCG00003846 mRNA upstream 523375 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003861 mRNA downstream 119698 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003873 mRNA downstream 493497 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003871 mRNA downstream 532145 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003872 mRNA downstream 546769 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003874 mRNA downstream 701426 22683016 ~ 22744727 (+) True AMCG00003874
TU4606 other upstream 46709 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 209866 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 420963 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 2601230 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3818182 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1728648 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2701810 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3812462 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 6080773 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 6081084 28062674 ~ 28067786 (+) False G4831

Expression Profile