RNA id: AMCG00003857


Basic Information

Item Value
RNA id AMCG00003857
length 2457
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00003857
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22039190 ~ 22043011 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAGAAGTTCAGAGGGATTTGTAAAGTCACCAGTGCAAGTCTTCACCTGGGTACAGCAGACCACACTGCTTTAACGGTTCACTGCCTTACAAACGTTACTGACTCCGTCGCAACAATGAAGAGACCCTGCGAGGACACTACCTCTGACAGTGACATGGATGAAACAATTGATGTTGGGAGTGAAAACAATTACTCAGGacaaaGTAGCAGTTCACTACTTAGGTCCAACTCCCCGACCACGACATCCCAAGTTAtggcaagaaagaaaagaagagggATCATCGAAAAGAGACGGAGGGATCGTATCAATAACAGTTTATCGGAATTGCGCCGATTGGTTCCCACCGCGTTTGAAAAGCAGggaTCTGCCAAACTAGAAAAAGCGGAAATATTGCAGATGACAGTAGATCACTTGAAGATGCTCCAGGCAACAGGAGGTAAAGGTTATTTTGATGCCCACTCCTTAGCGATGGACTTCATGAGCATTGGCTTCAGAGAATGCCTGACGGAGGTGGCCCGGTACCTGAGCTCGGTGGAGGGCCTGGACACCGCCGACCCCCTGCGAGTCCGCCTGGTCTCCCACCTGAGCACCTGCGCCTCCCAGCGCGAAGCGGCCGCGATGACGTCCTCCATGgcgcaccaccaccaccccttcCACCCGCACCACTGGACAGCTGCTTTCCACCACCTCCCGGCGGCCATCCTGCAGCAAAGCGGACTTCCTTCCTCGGACGGCGGCGGCAGGCTGTCGGAAGTCCCTCCGCACGGCTCGGCGCTGCTGACGGCCTCTTTCTCCCCCGCGGACTCGGCGCTCAGGGCGCCGTCTGCCGGCAGCGTGGCCCCCTGCGTGCCGCCCCTGTCCACGTCCCTGCTGTCCCTCTCCGCCACCGTCcacgccgccgccgccgccgccgcgtCAGCCGCCGCCCAGACCTTCCCGCTGTCCTTCACCGGGGGCTTCCCAGTGCTCACCCCCGGCGCGGCGGCCGCCTCTGTGGCCGCCTCGTCTGTCAGCCCGGCACTGTCGGCGTCCTCCGCGTCTGGCTCGCAACATGGCGGCAGCAGTAGCAAACCGTACCGCCCCTGGGGGACTGAAGTCGGAGCGTTTTAACTTGTCCGCGGTCAGCATGCGTAGCCATTGCAGCTGTGGTGCGTTTGAAGTCTTCCTCCCTCTCACTCTGCAGATTCAGCTCTGTAGGTTAATTGGCAATTTTGGGAAAGTGTTCATGGATTCCATTAGCTTTTACCTTGAGCCTGGCTTTCCGCAGAAAAAAACCCACTTGCAATATAACAGGTATATGGGGGAAAACAACGGATAATGTTTACATAAACTATACAAACTGGAcagactaaaatgtgactatttttttcttatttgaattgGGCACGTTGGATTAAAAGCAACGATCACAACATGGTTTCATCTTAAGTTCATGCGGAGAGAAAATGTTCTTGTCTTTCAACTGGACAGATGCGTGTGACACCAGGAGACGACATCGTCTGGATTCTTCTGGGcgatattattttatgtttaaactgAGAAGCTGTTACACACAAATATTGCTATTGAGTAATTGCCCCCGATAgactattattatataaacaaatatctaCAGAATCTTGGACTGTATATTCTCCCTTTTTCACTGAAGgacacatacagaaacacatgAAACAGTTAAATCTATTAAACAAGTGTTAttctataataaaaacataccaaagttcttttttttaagataatcaTTCATCCAAGTCGTGacaaattacaatgtatttcaattcgtgaactataaaaaaaacaaatgaaataaactttgtaaatatgtaaatgtgtcaGATCAGAAGGTAGAAACTATATTAAAGAtataaaattgcttttattatgaTGCACTTGATTTCTCTGCTGAGTGGAGGaaagtttgaaaatgtacttcGGGAATGTACATTAAACATggatacattataatttaaaaaagacaaaaatacaggaaacatttgaaatatttgctgTTAATTGAAACTACTgtaacttttttgttgttgctttatCGCTTATTTTGAGCTGAAAGTTGTAACCATTTTTCTATGCAAAGTCTGCAGAACTCactgattaaaaatattattttttaacatgtagCTAATTTTCATGTTTAAGGAATGTAAGTCAAATGGTGTGAGGGCAACTTTCTTTCAAAAGCTGAAATTGTGTATTGTATAATGGAAGATAaaccaatataaaacatactatTGAAATTCCATTATACAGGGCATTGGAAGCCAATTGAGTTGAGAACAGCACACCATGATATTAACCAGACACACAACTGTGggaaaatcaacaaaataaaaacacaatagagAGTTTTTCTAACAATTTGGTTTcttaacaaaacacataatCATGTGGATTTTACTAAAAACTGTGTTGTAACAGTTGTAACaccatatttcta

Function

GO:

id name namespace
GO:0060853 Notch signaling pathway involved in arterial endothelial cell fate commitment biological_process
GO:0007507 heart development biological_process
GO:0001570 vasculogenesis biological_process
GO:0035912 dorsal aorta morphogenesis biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09091 HEY; hairy and enhancer of split related with YRPW motif

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4637 lncRNA downstream 57674 21976824 ~ 21981516 (-) True G3825
TU4560 lncRNA downstream 306472 21732472 ~ 21732718 (-) True G3768
TU4552 lncRNA downstream 440809 21595849 ~ 21598381 (-) True G3760
TU4528 lncRNA downstream 591940 21446692 ~ 21447250 (-) True G3739
TU4526 lncRNA downstream 593972 21444768 ~ 21445218 (-) True G3737
TU4683 lncRNA upstream 121153 22164164 ~ 22170365 (-) True G3864
TU4703 lncRNA upstream 154590 22197601 ~ 22200678 (-) True G3882
TU4706 lncRNA upstream 181844 22224855 ~ 22225093 (-) True G3885
TU4721 lncRNA upstream 316774 22359785 ~ 22360096 (-) True G3898
TU4826 lncRNA upstream 728561 22771572 ~ 22771784 (-) True G3984
AMCG00003860 mRNA downstream 5414 22020296 ~ 22033776 (-) True AMCG00003860
AMCG00003858 mRNA downstream 43947 21993333 ~ 21995243 (-) True AMCG00003858
AMCG00003859 mRNA downstream 91115 21917334 ~ 21948075 (-) True AMCG00003859
AMCG00003852 mRNA downstream 241691 21782592 ~ 21797499 (-) True AMCG00003852
AMCG00003851 mRNA downstream 273190 21758577 ~ 21766000 (-) True AMCG00003851
AMCG00003863 mRNA upstream 59715 22102726 ~ 22124213 (-) True AMCG00003863
AMCG00003864 mRNA upstream 131248 22174259 ~ 22179397 (-) True AMCG00003864
AMCG00003862 mRNA upstream 149383 22192394 ~ 22202881 (-) True AMCG00003862
AMCG00003865 mRNA upstream 194791 22237802 ~ 22274733 (-) True AMCG00003865
AMCG00003866 mRNA upstream 318030 22361041 ~ 22373668 (-) True AMCG00003866
TU4276 other downstream 2532437 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 2594447 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 2613824 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 3886809 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 4094248 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 1486508 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 1486508 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 1486508 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 2220896 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 2245120 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile