RNA id: AMCG00003868



Basic Information


Item Value
RNA id AMCG00003868
length 1590
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00003868
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22493463 ~ 22508517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGACAGCTGTGTGAGCAGTGCGCTCGGATGCTCAAGGACTTCGTCGCTTTCGTGCGGAGGGTGTCGGCTGGGCTGGTGCGGGCGGTGCGGCGCTGTGCGGCGGCGCTGTGCCAGGGCGGCTGCTGTGCCAGGGCGGCTGCGGGCACCGGGAAGCGGTACAGACCCGTCCTGCAGCAACACGACAAAAGGGCAGCTCAGCAGTTCCTGCAGCACCTGGACTCAGGTACTGACACCCCACAGCTTGACGACGAATGCTTAAAGGCTTTGAGGACCTTAGCTGTTTCTGAAAACCCAGACTTGCAGCAGTCAGCTGCTATCTACTATTTACACATTATGAAAACTCCTCTACCCATTGACTTCCTTGAACCTTACAATGCGTTGTTGCAGTCCAGTGATCTGGAGGTACAGAAGAttgcctctctgtctctcgtcAATCTCTTAGTCGAGGAGAATGtGGACAAAGAGGTGGTTGTGCAGACAGGCCTGCTGGAGCCCATCTTGGATATGCTGGAGTCTGGCGATCATACAGTCCAGTGCAATTCCTGCGCATGTGTAGCCACCTTGGCAACATCGGTGCTGGTTCTTGCAAAGTCCTATGACCCCAGAGTCCAGCAGAATGGTGTCGGGGCCATTCTGAATCTCACCAGATGTGAGAAGACCATGAGTGTGCTCTGTACAGAAGGGGTCATTCCTTTGCTGGCCCTCCTCCTCCAGTCTCCAGACTCAGAGGTGCAGTATTACAGCTGCTCTGCTCTGAGTAACATCGCCACCAGGCCAGAGCACCACCCTGCCATGCTGCAACTGGGCAACCGATACCTGCTGAGAGCCCTGCTGTCCCTCATGTCCTCCCCAGTAGAAAAGAATTCCTGTCAGTCCTGTCGATGTCTCAGGAACTTGTCTGTGAATGTGAGCATACAGGAGGAGCTGGTGTCTCTGGGCTTTGTGGCTCAGCTGAGGGAGATGCTTCAATCTCCATCTCAGCCTGTGGCCGAATCTGCCATCACCCTGCTCTCTGCCCTGTCTGAGCACTCGCCCAACAGGGAAGCTATAGTGGAGGAAGGTCTTCTGAAAACTTTGGGACAGCTGGTCCATCATCAAAGGACCAATCCCACAATCCTCGGCCACTGTGCTGCCACTATCTGCAACTTGAGTGACAGTCAGAGTGCCCAGGCTGTGGCTGAAAGTCAGTGTCTGAATGGATTGCTTCAGGCTCTCATTTCCCCTGACATCATGGAAGAAGAACTGCTTTGTGTGACTGCTTGTTTAAATCATCTGACAAGCTTtgAATTACTGAAATCACACGTCATAGGGAAACTGAATGCCGAACACGCTGAACGTTTGGTGGGTTGGGCAGGCCAGACGGAGAATGACGAACTCTCCTTTAATTCAGCATCGATTATCAGCCAGCTAGAAGAACAAGGTGAGGTCTGCCAGCAGGCGCTGAGCCTCCTCCTCTCGGCGGGCTTTCTCCTCAGCCTTCTTCCGTGCCATCTCCTCCCTGCCGCGCctgggggggacggggggacgGGACAGGACCCACTCAGCACCAGCCTCATCAACATCAGCAAACCCCCCAGCACAGAATAA

Function


GO: NA

KEGG:

id description
K08332 VAC8; vacuolar protein 8

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4721 lncRNA downstream 133367 22359785 ~ 22360096 (-) True G3898
TU4706 lncRNA downstream 268370 22224855 ~ 22225093 (-) True G3885
TU4703 lncRNA downstream 292785 22197601 ~ 22200678 (-) True G3882
TU4683 lncRNA downstream 323098 22164164 ~ 22170365 (-) True G3864
TU4637 lncRNA downstream 511947 21976824 ~ 21981516 (-) True G3825
TU4826 lncRNA upstream 263055 22771572 ~ 22771784 (-) True G3984
TU4843 lncRNA upstream 347509 22856026 ~ 22856405 (-) True G4000
TU4887 lncRNA upstream 536798 23045315 ~ 23115685 (-) True G4039
TU4978 lncRNA upstream 891344 23399861 ~ 23423473 (-) False G4101
TU4977 lncRNA upstream 912481 23420998 ~ 23423473 (-) True G4101
AMCG00003867 mRNA downstream 59576 22433618 ~ 22433887 (-) True AMCG00003867
AMCG00003866 mRNA downstream 119795 22361041 ~ 22373668 (-) True AMCG00003866
AMCG00003865 mRNA downstream 218730 22237802 ~ 22274733 (-) True AMCG00003865
AMCG00003862 mRNA downstream 290582 22192394 ~ 22202881 (-) True AMCG00003862
AMCG00003864 mRNA downstream 314066 22174259 ~ 22179397 (-) True AMCG00003864
AMCG00003869 mRNA upstream 7262 22515779 ~ 22531824 (-) True AMCG00003869
AMCG00003870 mRNA upstream 27069 22535586 ~ 22557887 (-) True AMCG00003870
AMCG00003875 mRNA upstream 281731 22790248 ~ 22801229 (-) True AMCG00003875
AMCG00003880 mRNA upstream 574421 23082938 ~ 23089596 (-) True AMCG00003880
AMCG00003888 mRNA upstream 807689 23316206 ~ 23319144 (-) True AMCG00003888
TU4276 other downstream 2986710 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 3048720 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 3068097 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 4341082 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 4548521 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 1021002 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 1021002 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 1021002 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 1755390 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 1779614 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile