RNA id: AMCG00003869


Basic Information

Item Value
RNA id AMCG00003869
length 825
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00003869
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22515779 ~ 22531824 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAATCTGTGCTCGTAGCCGCAAGAGCTCATCCTCCAGGGCGGCTCTTCGTTACCTAGCAGAGTGTCCCTCAAATGTGGAGACCATGAAAAATGAACTTGGGATGATGGTGAGCTTGGAGAATCTAATGCAAAGGGGTGAAGAAAAGGATGATATCGGTGTCCTAGCAAATGAAGTGTATGAGGTGTTGAAGGCGCCCATTAACACTCAACCTCCCCGAACTCCAGAGGGACCCAGAAGAAAAGTGAAATCGCAGTTCTTCATTAATAGTTCTAACAAGAAGGCTAAATCTGTCACACTTCACATCCAAGGGCTGGACAATACGAATCATAGAGGTCTGTGTGAAGAAGCTTTATTGAAGGTCAAGGGAGTAATCAGCTTTACGTTCCAAATGGCACTCAAGAGATGTACAGTGCGGATCCGTTCAGATCTGCCAACTGAAtcTCTGGCATCTGCTATTGCAGCAACTAAAGTCCTTAAAGCACAGCAAGTTGTGAAAAATGAAACTGGACAAGAGGTTTTAATTCCACTGCGCACGACACATGCCACAGTTCAGGAAAACTCGAATTTGCCAGATTACCTGCCTGAAGATGAGATAATCAACACCATCATCCCTGTCATCATGCTACGAGATAATACAAGACAGTCGACACTTGTTCTAAGATCCTTGTCTTCGCGGGACACggaggatgaggaagaggatCTTGAGCGGGGGCTGTCGGGGCTGTGCTGCAGGGAATGTAAGCGCAGGGAAGGCAGCGAGGGGGGGCTGATTTTGGAGGCCACCTGGATGGCCACTGTATCAGAGCGGGAGGAGCTCTGA

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4721 lncRNA downstream 155683 22359785 ~ 22360096 (-) True G3898
TU4706 lncRNA downstream 290686 22224855 ~ 22225093 (-) True G3885
TU4703 lncRNA downstream 315101 22197601 ~ 22200678 (-) True G3882
TU4683 lncRNA downstream 345414 22164164 ~ 22170365 (-) True G3864
TU4637 lncRNA downstream 534263 21976824 ~ 21981516 (-) True G3825
TU4826 lncRNA upstream 239748 22771572 ~ 22771784 (-) True G3984
TU4843 lncRNA upstream 324202 22856026 ~ 22856405 (-) True G4000
TU4887 lncRNA upstream 513491 23045315 ~ 23115685 (-) True G4039
TU4978 lncRNA upstream 868037 23399861 ~ 23423473 (-) False G4101
TU4977 lncRNA upstream 889174 23420998 ~ 23423473 (-) True G4101
AMCG00003868 mRNA downstream 7262 22493463 ~ 22508517 (-) True AMCG00003868
AMCG00003867 mRNA downstream 81892 22433618 ~ 22433887 (-) True AMCG00003867
AMCG00003866 mRNA downstream 142111 22361041 ~ 22373668 (-) True AMCG00003866
AMCG00003865 mRNA downstream 241046 22237802 ~ 22274733 (-) True AMCG00003865
AMCG00003862 mRNA downstream 312898 22192394 ~ 22202881 (-) True AMCG00003862
AMCG00003870 mRNA upstream 3762 22535586 ~ 22557887 (-) True AMCG00003870
AMCG00003875 mRNA upstream 258424 22790248 ~ 22801229 (-) True AMCG00003875
AMCG00003880 mRNA upstream 551114 23082938 ~ 23089596 (-) True AMCG00003880
AMCG00003888 mRNA upstream 784382 23316206 ~ 23319144 (-) True AMCG00003888
AMCG00003887 mRNA upstream 790505 23322329 ~ 23333559 (-) True AMCG00003887
TU4276 other downstream 3009026 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 3071036 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 3090413 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 4363398 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 4570837 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 997695 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 997695 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 997695 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 1732083 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 1756307 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile