RNA id: AMCG00003870


Basic Information

Item Value
RNA id AMCG00003870
length 3381
RNA type mRNA
GC content 0.39
exon number 11
gene id AMCG00003870
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22535586 ~ 22557887 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAAGGACAAATGcattcttttttcttatttttcaggAGATGGAAGAGTAAGAGGGCAAACCGGGGTACTCTCTGAACGTAGAGGGTCATACCCATTCATAGACTTCCGATTGTTGAACACTACAGCGCACTCAGGAGAAATCGGCActaagaaaaaagtgaaaagactTTTGAGTTTTCAGAGGTACTTTCATGCTTCCAGGCTTCTGCGTGGAATTGTACCACAGACCTCCCTACACCTCTTAGATGAAGACTATCTAGGACAAGCTGCGcaCATGTTGTCGAAGGTTGGAATGTGGAATTTTGACATTTTCCTGTTTGATCGACTCACAAATGGTAACAGTCTAGTTACACTTTTGTGCCATCTTTTCAACGTCCACGGACTTATTCATCATTTCCATCTAGATATGGTTAAATTACACAGGTTTCTAGTGATGGTACAGGAAGATTACCATAGCCAAAACCCATACCACAATGCCGTTCATGCTGCTGACGTCACTCAAGCCATGCATTGCTACCTAAAGGAGCCCAAATTTGCCAGATATCTCACCCCATTGGATATGTTTCTGGGGCTGATGGCAGCTGCAGCCCATGACGTGGATCATCCTGGAGTCAATCAGCCATTTCTGATAAAAACCAAACACCACCTCGCCAGTTTGTACCAGaATGTGTCGGTGCTGGAGAACCATCACTGGCGGTCCACAGTGGGCATGCTCCGAGAGTCCGGGCTGCTCTCCCACCTGCCGGCGGAGATGACGCAGGACATCGAACAGCAGTTGGGCTCCCTCATTCTGGCAACAGACATCAGCCGACAGAATGAGTTTCTTGGTCGCTTTAAATCTCATCTGGACAGTGACGATTTGAGTCTGGAGGATGTAGAGCACAGACACTTCATGCTGCAGATTGCTCTCAAGTGCGCTGACATCTGCAACCCCTGCCGGGTGTGGGAGATGAGCAAGCAGTGGAGCGAGCGTGTCTGCGAGGAGTTCTACAGACAAGGTGACCTGGAGAGCAAATTTGACCTTGAAATCAGTCCCTTGTGTAATCAGCAGATAGACACAGTTCCTGGAATACAAATAGGCTTCATGACGTATATTGTAGAGCCTCTCTTTGAAGAATGGACCCGATTTACAGACAGCAGCCCCCTGACAGAGACTATGATGAGCCACCTGAGGAAGAACAAAGCCAGGTGGAGACGGCTGAGACACAAGCAGCACCACAGAGACGGGGACGCGTCCAGCGTGTGTCTCAGTGACgcggaggagggaggagggccCTGATGCCCATAGGAGGCGTGTGGTCTGCGTGGAgacagttgttttttcttctcagacGTTCATGATGAATGCTATGAGAAAGATATAGTGCGCCGAGTGCTGCCACTGACACGAGCACCAGAGAAGGGCGACACAATGAAGCAAATGAAAGGTCAACCAAATCCTTAATTTTCCCAATTCCCCAGTCTTACTAGAAGTCATTTTTTGAGAAGAGGGGAGGTTGCCCTGCCTAAGAGATAATTTAACTCACAAGTGATAATTTTCCAACACAATGCCATTGAAACTAGAAAAGATGAAGGAGCAGAAATGAgactaatgaataaataagtaattataaaatattgctcCTGAGAAAGtgaagtataaataaatgtctgtaattaaaatggcaGCTGGGCTGCACCACAGGAAACTACTGAAACAGAGCAGAAATCATGTAAAAACTcaattgcaaaaatattttttttttctttctaaaatgacaactatttttcaaatttttatACAGTTTGCACCACATTTGGATGCAATCATTTTACTTTGGACTAGATTccttttattacagtttaaaaaggcACTAGAACATGTTTCCAACAAAAAGATTGTaaggaaagtattttttaacaaaagggTTGACCTCACAAAATACCATGTCAACcagctttttatatatttatgtgtgcgATTAATGGTTAccattgtacattttgtaaatagtGAAACTACTGATTCAAATGCCAAAATTACTGTAGAAGACTGGTACCTGTATAAAAAGGTGGTACTTGCCACTGTTACATGAATACTGTTACTTTTAATACAAAGGatatttgtaaatagtttatatagTTTCACAATACACCATTGTGTGCACATATACAGAAGCCTTAACATGGTCATTTTCCAGTGATACTGTTAGCACAAATGGAACTTCTAAATTATTTAAGTTACAATAAAAAAGCTCAGAAACTGATGTTCAGAAGGGATTGCCAGTTAATCCTTGTCAGGACATTTCTGAAACGTCACAATTCCCCCCcatttcactattttatttcagctgtggTGACTGTCCCAGGGGCAAATAGCTCATCCACTGTGAGCATTCAATGTTTATTAGATTTTCCTAAACTTTAGAGAATTGTTCTTTGCTGACCTtgagatattttatttaaagttttttagAACACATCTATATATTTCCCTTATTCAGCTTTTGATCTCTTTAATTTCTGCCCCACTTgtgctgcttgttttttttagttttttttaattattattacatgctTTGGCATGATTCATGTTCTTATACTGTCCTAAAGAAAATCACTTTGGCAAGAACATtgcttataattatatttttgtatcacGGAATACtattctttttcttattttttcagggttgacaagcaaaacaaataatttgtcAATTTTATGTATCGCACAATTTCTGCTTTCCATTTCATTGATATTGTAGTAATACCACTCACATTGACAccatgtactgtacattttttcaGGTAAATATAAACACCTTGAAATATCAAGTAGGCAGCCATTTATActtggatacattttaaatgcatatgtagAATAATTTTCCAAACACTGTGATGAAGTGGAAAACaggcttttaattattatttttataaaagttacattttatacaaaccTACTGTAGTTAAAcattctgaaataattaaataggcctcctaatttatttattatttttttctgtacaaaaCATAAGTAGAACCCCTATTCATACTTTTCCCTGCATTGTAACTGAACAAGTGTTAGGAAATGTCACTTTGTGTGCTTCAATACATTCGCATttagatgttttcattttgagcAATGTTGGATTAATACCTCGACTTCTAGCAACGTAAACTAAGAAACCTTCTGTCAGAGAAATGCAATTCATATGGCTCTCCAATTATATTAAGTGCACCTCATTTTTCATtatccattttttaataaaatgtttgaaaagaaTTATATTTATACTGGCATAAGAAGCTCAGTTATagtctttcttttttacaaCAGTTGATCATCTCTGCTATCCTTCTTTCACTCTGGTTTtgagggaaaaaatgaaataac

Function

GO: NA

KEGG:

id description
K18436 PDE7; high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4721 lncRNA downstream 175490 22359785 ~ 22360096 (-) True G3898
TU4706 lncRNA downstream 310493 22224855 ~ 22225093 (-) True G3885
TU4703 lncRNA downstream 334908 22197601 ~ 22200678 (-) True G3882
TU4683 lncRNA downstream 365221 22164164 ~ 22170365 (-) True G3864
TU4637 lncRNA downstream 554070 21976824 ~ 21981516 (-) True G3825
TU4826 lncRNA upstream 213685 22771572 ~ 22771784 (-) True G3984
TU4843 lncRNA upstream 298139 22856026 ~ 22856405 (-) True G4000
TU4887 lncRNA upstream 487428 23045315 ~ 23115685 (-) True G4039
TU4978 lncRNA upstream 841974 23399861 ~ 23423473 (-) False G4101
TU4977 lncRNA upstream 863111 23420998 ~ 23423473 (-) True G4101
AMCG00003869 mRNA downstream 3762 22515779 ~ 22531824 (-) True AMCG00003869
AMCG00003868 mRNA downstream 27069 22493463 ~ 22508517 (-) True AMCG00003868
AMCG00003867 mRNA downstream 101699 22433618 ~ 22433887 (-) True AMCG00003867
AMCG00003866 mRNA downstream 161918 22361041 ~ 22373668 (-) True AMCG00003866
AMCG00003865 mRNA downstream 260853 22237802 ~ 22274733 (-) True AMCG00003865
AMCG00003875 mRNA upstream 232361 22790248 ~ 22801229 (-) True AMCG00003875
AMCG00003880 mRNA upstream 525051 23082938 ~ 23089596 (-) True AMCG00003880
AMCG00003888 mRNA upstream 758319 23316206 ~ 23319144 (-) True AMCG00003888
AMCG00003887 mRNA upstream 764442 23322329 ~ 23333559 (-) True AMCG00003887
AMCG00003886 mRNA upstream 784357 23342244 ~ 23359840 (-) True AMCG00003886
TU4276 other downstream 3028833 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 3090843 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 3110220 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 4383205 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 4590644 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 971632 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 971632 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 971632 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 1706020 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 1730244 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile