RNA id: AMCG00003872


Basic Information

Item Value
RNA id AMCG00003872
length 2737
RNA type mRNA
GC content 0.41
exon number 8
gene id AMCG00003872
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22528359 ~ 22536293 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATGCATGCTTGTTGGCGCGGCTTTATTTGAGTTATTGTGACCTGGGAGCATCACTGGTACCCGGATCCGGTGTGACTGCAACGTTCAAACCCGGCTTCTGTTAACCGGGGCCGTCTCGCTGTTTCAGATGTCTCTGTTTGTGGATGTGTTAGACCTCCTGCGATACCTGCTTGACTATTTTGGAGTTTCACCTGATATGctAGTACCAGTATGGGACAGTCAGCTCTGTGGTCAGTACCGAAGCATTATTCGCATGATTGGTACCAACTTACCTTTAAGTCCTTGTCCAAGAGTACATTTTCAGCAGATCACTCTGAGGGGACGGCATGGCAGTGTGGACTACCCAGACGAGGGCCCTGTAGTCCCATCTTTTGCAGATGTAATGTGGATAGCTAATGATGAGGAGGAAACCCTTTCTAGGTTCAGGAATGAGATCCATCCTGTCAAAGGCCGGCAAACGGTTCAATTTCTCCCAGCCTTTCCAATGCAAACCTCAATGCTGCCCCAGCCTGTGAAAAAAGTGTTCCAGAAAAAGCCCCAGCGTCCTCCAGATGCCGAGGCCTTTAACAAAATCACCGCCCTGGAGGATGAGCTCTTGCGGCTACGAGCACAGATTGCCATGATTGTAACCACACAGTCGGGTTCTGCCCGTTCTCAGTGTGAGCTGCCTGGCACCCCTGGGATGTCTCCTCTCCTCCCAGCGCTGACCTCTACTCCAGTCTCTGTGTCTCGGTGCGCTCCCCCGCCCCCTGCACCCCCATTACCATCCTCGCCCAAATGCAGGGCAGCGGACATTTCAGCCTTTGACTTGATCAGACAGCGCCGCGCCACCAACGTGACAAAGCGGAGCGGCAGAGAGAAGGACTCATCTCTGAAGTCCTCCAGCCTGCCCAGCATGTTGGATGTGCTGAAGGATCTGAATAAAGTTCAGCTGAGGTCAACTGAAAGGTCTCCGGGAGGTACACCAGTCATGAAGAAAGATAAGAAAAGAGTATGCCTCTCAGACCCAGCTTCCCTGATTGCTGAAGCCCTAAAGAGGAAAtttgcacacagacacaaagaggACTCATTTGACAAAGAAAACCGGTCATTTGAGACGTCACCATTTGGGAGTCCAGAGGTCCCCAGGatcGCCCTGCGCACCCTGGCCTGCCCTGGGAAGATCACTCCTGTAAGATCAGACCACGTGAGTCCGGCGCTCACAGGGAGAGCTGCTCTTGCTTGAACCAAAGCTGCTGTTTTCATAGttatatttctgtaaatgttttttttttttaaatgctttttaaattatccATGTTTatcaatttgtatatttgtttttaatacaatttgtatttgctttacttttgcctttttcttctcatgtggccttttaaatgtgtatattttgcttGAGAAATGAAAGGCTTTTTCTATATTGATGATCCTTAATGCGATTGTGGAGCTACCTACTGCAGTTAagtgtaacaattgtaataattctgcattgttttctttattcagttatatacttaaaaaaaaatatcttgaaatgcaaatgttgcctattaagtttttttttttttttcacacgtACAGTGTTCTGGATTTTTATTGCAAAATACCAATAGCCATTTAGTCTTTAAAACTGTGGCATGAAGCTTAAAAGATGCGAACATGTTGATCAGTAGAGCACAGCGTGGTGTTGGGCACCttaagggctggtttcacaaacCCAgatagcactagtcttggactatctaatattatttagttattatttaatcgtggtctgtgaaaccagctgtacaTGTTTTGGTCTTTGTTAATACCTGATATATTGCTACCCAGCTCTCGGTACATGCTTTTTCTGGGGGAATGCTTTGAACAATGGAGAGTTGACCAAAGAAGCCCTTTCCTCTGCCATTTCTAAAGAATAAAATGGGATGAGCCTGTAATAAAACTGAATCAAATCACTACACTGATGCTGCAGATCAAAGTCTGGTATAATAAAGGATATTATATAGAAGAATACATAGCTtcagttatttcattttttccctcaAAACCAGAGTGAAAGAAGGATAGCAGAGATGATCAACTGttgtaaaaaagaaagactATAACTGAGCTTCTTATGCCAGTATAAATATAAttcttttcaaacattttattaaaaaatggataATGAAAAATGAGGTGCACTTAATATAATTGGAGAGCCATATGAATTGCATTTCTCTGACAGAAGGTTTCTTAGTTTACGTTGCTAGAAGTCGAGGTATTAATCCAACATTgctcaaaatgaaaacatctaaATGCGAATGTATTGAAGCACACAAAGTGACATTTCCTAACACTTGTTCAGTTACAATGCAGGGAAAAGTATGAATAGGGGTTCTACTTATGttttgtacagaaaaaaataataaataaattaggaggcctatttaattatttcagaatgTTTAACTACAGTAggtttgtataaaatgtaacttttataaaaataataattaaaagcctGTTTTCCACTTCATCACAGTGTTTGGAAAATTATTctacatatgcatttaaaatgtatccaagTATAAATGGCTGCCTACTTGATATTTCAAGGTGTTTATATTTACCtgaaaaaatgtacagtacatggTGTCAATGTGAGTGGTATTACTACAATATCAATGAAATGGAAAGCAGAAATTGTGCGATACATAAAATTgacaaattatttgttttgcttgtcaac

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4741 lncRNA upstream 26530 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 27533 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 123505 22402604 ~ 22404854 (+) True G3907
TU4707 lncRNA upstream 288261 22236096 ~ 22240098 (+) True G3886
TU4705 lncRNA upstream 303258 22224718 ~ 22225101 (+) True G3884
TU4802 lncRNA downstream 192429 22728722 ~ 22769227 (+) False AMCG00003874
TU4834 lncRNA downstream 332585 22868878 ~ 22869139 (+) True G3991
TU4909 lncRNA downstream 729977 23266270 ~ 23345005 (+) True G4057
TU4923 lncRNA downstream 779041 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 779335 23315628 ~ 23319122 (+) False G4058
AMCG00003871 mRNA upstream 4834 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003873 mRNA upstream 30304 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003861 mRNA upstream 421629 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003856 mRNA upstream 546769 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003855 mRNA upstream 569374 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003874 mRNA downstream 146723 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003876 mRNA downstream 287477 22823770 ~ 22829038 (+) True AMCG00003876
AMCG00003878 mRNA downstream 308050 22844343 ~ 22859805 (+) True AMCG00003878
AMCG00003877 mRNA downstream 335212 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003879 mRNA downstream 505530 23041823 ~ 23046232 (+) True AMCG00003879
TU4606 other upstream 604572 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 767729 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 978826 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3159093 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4376045 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1173945 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2147107 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3257759 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5526070 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5526381 28062674 ~ 28067786 (+) False G4831

Expression Profile