RNA id: AMCG00003873


Basic Information

Item Value
RNA id AMCG00003873
length 3580
RNA type mRNA
GC content 0.44
exon number 17
gene id AMCG00003873
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22475087 ~ 22498055 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGTTGAGGTCAATAAATAACCGCTAGTGTTAAAGGTTGATGAGAGGCAAAGACTAGCAAGAGAACGACGAGAGGAGCGTGAAAAACAGCTTGCTGCTCGGGAGAATGCCTTGCTAGAACGAGAGGAACGGGCAAAGCAGTACCACGAGAAGCAGCTGGAGGAGCGCAAGAAGAAACTCGAGGAGCAGAGATTGAAAGAGGAGAAACGGCGAGCAGCTGTAGAGGAGAAACGGAGACAGAGGCTTGAGGAGGAAAAGgaGAGGCATGAAGCTGTGGTGCGTCGGACCATTGAGAGAAGCCAGAAGCCGAAGCCGAAACCCAGTCGTTGGTCATGGGCAGGAGCAATTCATGGCAGTACCATCCATCCCAGTGATGCAGACAGGCGATCAGTTTCCACCATGAACCTCTCGAAACACGCAGACCCTGTCATTAGCAAGCGGCTCTCGTCTTCCTCTGCAACGTTGTTAAACTCTTCAGACAGAGCCTTGCAGAAAAGGACTCCGTTCTTTAATAAACCTCTGTCAAAGCCACGCTCCAGCACCAGGGAAAAGGATCGACAGCCAGTTATCCCCATTTGTCCCCGTTCAGCATCTTGCAGTCCTATGGCTCCATTGTCCTACAAGTCTTTCTGTAGGAGCACTGAGCGACAGAGAGTCGTTCCCAGCACAGACTCTGCTGCCCGGAGAAGAACGGTTTACTCAGTGATGATTGATAAAAGAGAAAAGGATAGAGATAATGAGCGGAAATCCTGGAGCAACCTCTCCACTCCCACACCTACTGCCAGCAAAAGGTCTCGGTCTCCTGCTAATGTGAGAAGCAGAGCTACAGCGCCCTCTCCTGTGCGaGTCCCCCAAAAAACCCCACCAGTGATCAGCACTTCCAGGCCTGTGAGGTCTCCCCCCGACCCCAGCCTGGACTCCCCCCTGCACGGAGGCCCCCTGTCTCCTGGCAATATGAGGCCCGTGAGGATCGTGCTGGAgaatgaggaagaggaggaaggcGCCGACCACCTGCAAGCTTCAGACAAACCAAACCCTGAGCCACCAGCACCTGCTAAAGAGCCTGAGCCCAAGTCTGAATCTGTTAAAGAGAGTGTCCCAGTCCCTCCACCATCCCAGGCCATGTCGTCTGCAGGGACGCCTCCAGCCAGTTCTGTGAAGCCCTCTGCAGGTACCACCAACCCGGAGGAAGCTACACGTCTGCTGGCTGAAAAGAGACGGCAAGCCCGCgaacagagagaaaaggaggaacAGGAACGCAGGGAGAGAGAAGATGACGAAAGGCGCGGCAGGGAGGAGATGGCACGGAAGAAGGCTGAGGAGAAAGCCCGCCGAGAGGAGGAGGCTCAGCGCCTGctggaggagaggaagaagagagaggaagaggagaagcgttctgaggaggagagagcacagagggagagggaggaagcagAGCAGCTCCAGAAACAGaaagaggaggaagaagcTCGTCAGCGTGAGGAGACCGAGAAGCTGCGTCAAGAGCGGGAGAAACATTTCCAGAAAGAAGAGCAGGAGCGCTTGGAACGGAAAAAGcgTCTGGAGGAAATCATGAAGAGAACAAGGAGGTCTGATACTCCTGATAAGAAATCTGTTTCACAGAGGAATGGGGTCATGTCTCAACAGAGTAAAGCAGAAGAAACGGCCGTTTCCAGTCCGTCTGCAGAGTGTGAGACCGTGAGAGTCACAGAGGAGCAGCCGAAGGAAACTGCAGAGGAACAGCACACGGGCAGCAATGGGCACGGCGCTCTGGGCCCTTCACTGCCACTGCCCGTAGCTGAAGAGAGCACTTCAGCAGAGACCCAACCAAAAGAGAACGGGATGTCGGTGCAGAATGACACCTTTGAGGAGGTGATCAACCTGCCTGCAGGTACCAAATCATCAAGGCTTGAAATTACGGGGGACGAGAACCAGGACGTCAGCACGCTCATCCCTGTCATTGCATTCAAAGAAAATGGCTCTCTGAGATCCTTGACTAATGTAGATGATGTTCAGTCACATCAAAGAGCAGAGGTTATCTGAGAAATCCAGATGAGAGAGAGCATTCCGAATTGGATGACGAAGCtgtgatgatttatttttttttttattattttcacaaaggAATGACTGCAGCGATTTTCCTTACCTGGCACTTTGAAAGAACACTTTAAACAAATTTTGTATCAACAGAATTTAAACTGTAAACCTATCCCTTTTAAGTGACCAGAACATGTTTCTCTCTCCAGTTGATCACgctttgtgtgcttttgtgttaAACAGCTTTTCCAACATACTCCTTGCAACATTTTTTGAATCCTCGgaagaaaaagataaacatgttttgtgaCTGTGATGGGCAGAGGGGAATAATTTTGTTTGGTGTTACTAATTACTGTAAATTGAAATCAGCTGTAATGTTCTTATCTAATACTTGAAGAAACCTCTTTGCTTTAGAAGTATGAGCAAATGaggttacattttaaacctaGTGGTTTAAATATGATGGCAGATAAGGTGCATGGGAGTAAAAGACTTACTGTTTTCTCAGTAAACCAAGAATAGTTTGTAAagtgctgatttattttttattttttcatgtaaaatgtggaaaattagTGCATTTTCAATTATGATTAAAGCCATTGGCTTTGACAGGTTAGTCTTTAATTGTTTTGGCAAAGCAGCCGGGagatgtattaaatatgcattcAGTACCCAAAATAGTATAATTATGGGATTTAAATAACAAGGTCCAATAGACTTataatctgtaataataatagatttaaatttctttaaaacaaatgctgctaCTTTATGAATTTCCTTTGCCTTATCGGATCATGAGAATAAATGAGATTTGAATGATTTGTGAAAGTCTATGCTTTTGCTCGTTTAAGAGCAAAGGGCTTTAAATGGACATggagtttaaaaatgcattcctaAAATGTGATTTCACTGTTTTTTAGACTCAGATTATTTCTGCAACACTTGAATTGTTAATTTCCATCTCACACATTCTAGGCATTGCTGCTCTTTAGCATGGTTCTCAAAGCTTTGCACTTTTACACGGTTCGTAACAATTGTTTCAGAACTACTGAAAGTCTTTCGTTTGGTACAAAAAGAGTACGACTGTGGCAGGTTATCGAGCCAGTCATGCGgatttgaaatattgaaataaacatttatgcAGGGATCTTTTATTACGTCTCTTGTTAAAATTATGCAGagggtaaatatatatatagatatatatatatatacatataaatatatacaaaagttaaagtgtatattttgttaaaacaataaagctttgaaaacaaaggggaaatgtttatccattacattttaaagctgaaGAATTATTAAAGCCCTTCAGTGGTTTGTTTCAGTAATAAACTGTGATACAACTATTCTGATTGGGTTCTGTTTTGTGTTCCTTAAAGTCCACTCCTGCCCATGTACATAGAAGTTATTTAATAAGGAGACCTTTCTGTCAAAACTGTAGTAGTTTTCATCCATTCAATCTGTATAGCAtgtaaaaattcaaataaactttGTTTGAAAAACA

Function

GO: NA

KEGG:

id description
K10433 MAP7; microtubule-associated protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4730 lncRNA upstream 70233 22402604 ~ 22404854 (+) True G3907
TU4707 lncRNA upstream 234989 22236096 ~ 22240098 (+) True G3886
TU4705 lncRNA upstream 249986 22224718 ~ 22225101 (+) True G3884
TU4697 lncRNA upstream 274409 22197314 ~ 22200678 (+) True G3878
TU4690 lncRNA upstream 290276 22183243 ~ 22184811 (+) True G3871
TU4740 lncRNA downstream 2472 22500527 ~ 22500826 (+) True G3914
TU4741 lncRNA downstream 2862 22500917 ~ 22501829 (+) True G3915
TU4802 lncRNA downstream 230667 22728722 ~ 22769227 (+) False AMCG00003874
TU4834 lncRNA downstream 370823 22868878 ~ 22869139 (+) True G3991
TU4909 lncRNA downstream 768215 23266270 ~ 23345005 (+) True G4057
AMCG00003861 mRNA upstream 368357 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003856 mRNA upstream 493497 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003855 mRNA upstream 516102 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003853 mRNA upstream 573222 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003854 mRNA upstream 612288 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003871 mRNA downstream 15680 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003872 mRNA downstream 30304 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003874 mRNA downstream 184961 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003876 mRNA downstream 325715 22823770 ~ 22829038 (+) True AMCG00003876
AMCG00003878 mRNA downstream 346288 22844343 ~ 22859805 (+) True AMCG00003878
TU4606 other upstream 551300 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 714457 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 925554 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3105821 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4322773 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1212183 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2185345 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3295997 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5564308 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5564619 28062674 ~ 28067786 (+) False G4831

Expression Profile