RNA id: AMCG00003876


Basic Information

Item Value
RNA id AMCG00003876
length 3360
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00003876
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22823770 ~ 22829038 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAAACAAACATGGCGGCAGGAGACTGAAGCACTCGCGGTTACATTGCAGTTTTATCGACAGCTGTTGATATTTGATCCTTATATAAAGGGTCGAAAGGAGCGAAGTCACAATGTCTCGACACAGAAATGTCCGCGGTTATAACTACGATGAAGattttgAAGACGATGATATATATGGACAATCTGTAGATGATGACTATTGCATTTCACCAGCcacagCTGCCCAATTCATTTATTCCCGTCATGAGAAACAGGCAGCCTTTGCAGAGCCCCTGGAGGAAGAGTTTGGGACAGAGGAGGAAATGCCGGTCTCTCCGAGCCTCAACCAGCACAATCTCAATGCTCTCGATCAAGgGAGACTGTTCTCCTGTCTTGATCAAATGCGAGCAGTACTTGGAGAATCTATCCCAGATCATGTACTAGCAGACGCTGCAGTCAGCTGTCAGTTTGATGCACAGAAGGCTTTGGATTTGGTGCTTTCTGAGGAAAGTTGGAGGACTCCAGCCACAACAAGTCAACTAAACACTTCATCAGCAGCGAAAACTGACAAAGGAGCCCTATTTTATTCATCAGATACTAGGATTCCTAAAAATCAAGAAACCATTACTGTACCATTGACTTTTTACGATACAAGTTTAACAACCCCTTTGAGTCTCGCTACACTGTTAGGAAAACCTGACATTCATTCAAGTGCTGGACAGCTCTGTAAAAACCTTTGTATGGAGTCTGCCGATGAGGGGGTACTGAGGTCTTTCAAGGAATCTTTGCCTAACTTTTCATTCTCAGGCAAGGATATTTCAGGTCAGGGCCTGTTGTATAAAAACTCACAATCGGCAGGTAACAACTTGGAGGAATCCAGTCTGGCACAGTTGATTTTGCAGCATGATCAGAGCCTTCAAAGAGGGGCAAATTTAAATAGTCAGAGTTTATCAAATATTCCTTTGATGACCAAAACAATGGAATCTGTTATGCAGAATAAGCCATCTCTGCAGCAGACATGTGGGGTTTTGAGTCAGCTTGAAGCTGCAGGCCAGCAAAGTACTAACTGTCTAGTAAGTCTGAATGCATTAAATCCATCTTTTCCCAGCACATGCTCCCTCACTTCCTCCTTGGGCAGTTTATCCTTAGCACTACATGAGCCCaatcagaataaaaaaacagaagcgTTTGGAAGCCTCCATTCTGTGTTACAAAGCAATCCGTTAGATATTCGCAGTAGTAATGGTAActgtaaagcaaaacataaGGGAAGCCCCTCCTTGGCAGACCTCATACAAGAACATAAAAGCAGCAGTCCAACTCTTTATACCTCCCTTCCTGATATTCAGAGCAAACCAGGGGAAACTCAAGCACTGCATTCATTGGTGTCTATGTCACTGTCACAGTGTGCAGCCGAGAATGCAGGTAAAATGGGTACTATATCAATAGCAGGGTCTTTGTCTTCACTTTTGTCCCCCAAAAATAAGAAATCCAACGAGGTAGAAAACTGCTCTGTATTAAGTTTGATCCCAAGCAGTGTTAGGAATGAACTCCAAACTCCCATGTTGCACACCTCTTCCGAACAAGATCTTAAGATTGATTTGAGTCAACTTATCCAGCAGCCACCCAATGCCAGCCTGAAAGCTgcttcaaaaaacaaattgaaggaTAAAAACGTTAGGAATGTTACGGACAAATCTTTGTTGATTTCTCGTAAGATACGGCTGTGGCAGGGCCCTAACGCCTCGGTTTTTGGAAAACCATCAGTATTTGCTATGAGTTTGTCTGTTCAATTCCCTTTTAagaatttcaagaaaaaaacagtttatacTCATCGTGCCTTTTTGTATAGCAAACAGATGCAACTAGTCAAGAAGAAAGACCAGGGacctttgtttaaaataacgCCTTTTGACTTTCAGACACCCTCGCCAGATGATATAATAAAAGCCAACCAAAAGAAGGCATTCATGCGAGAATAGCTCAGACATGCtaggttattttttaatttggactttttaattctaaaattgTCTTCAaacttatgtatgtatttatacacacagacatacatacatacatagaacaTGTAAGTACATCAGTTACCAGCattcaggtgtttttttaaacaaatttgtaaattaactttttgtAATAGTCTAGAGACTTCTACCTTGTTTTATGACTTTATACAGTGTGTTCAAATATGtagaattaattacaaaatgtttctttgctCTGTAATTGGTTTAACGTTCATGGTATTTGGCCTACAtgtctgtaaagttatttgatGAGTTGTAGTTTGTTGCAtcttaataatttttttttttggtaaatacatatattttttaacataattaaagcatattttctgttacaaagTTCAGATTTCCACTAAAGCTTAAATCTCAatcgacaacaacaacattctGGCTACTTTGTTTGCACTGTTTATTCCTTTGACTTTGGAAACACCTTAAGTCAGGTGAAATCAGATTGAAATGGTAAAATAGCAAACTGAACAACTGTTTATCAATGATCATGAAAATCTGTGAACAAATGGTACTGGTTTTAAATCATGTGACACATGCAGCATGGATAGTGATGTAGGTATCCACCTCAAAGATGCTGAGTGGCAAAGTTGTGGTCTAGAGACTGAGTGTGTTTTGGTGAACAGATAGGTTTCATCATCAGTCTTTTACCCAGCTACTTTAATCGTACCCATTCATGACAAAATGGGTTAACAGCACAAGATCTTCAGCAGCATAATGTAGTTACTGGGAAGCAATGTGTCAAGACTATGATTGGGGCaaatagaagtaaaataaagaatttaaaatataggtAATGCACTgataaatcaaataaagcaatataaacttattttattccaaTTGAAGAAAATGCCTTTTTCGAAGCCGGTATAGTGATGATTTCTAACACATAATGACTTCAGGTCCTAAAGGAGGTAGAAATACTTTATATCCTACTGCACAGACCATTTACcttttatagttttttaataGGAACGTTGTGCCCTTATAATACAATACCAGCAGGGTGGCAGTaaagaattaatttaaacatcagTCCCTTTTAGATGAATTTGGTGTAACATTTGACATCTTTCAGCTTCAAATGTTAAACGGCTCGTCTGGTTTCCATGGTTTTACGGGATGTCACATCCACATTAGAACTGAAAAGGTTTATGAATTATGTGTAGCATATCATATATTAAATACTCATATGAATAATAGGCCTACTTGGAAACAAAAACTAGTTAAAGACCTGCAAACCACAGTTTACAGAACATATAAGAAAGAGGACATGTTTCACAGGTGCGCAGACTTTGGAAATAATGAACAGTTGACGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4802 lncRNA upstream 54543 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 321941 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 322944 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 418916 22402604 ~ 22404854 (+) True G3907
TU4707 lncRNA upstream 583672 22236096 ~ 22240098 (+) True G3886
TU4834 lncRNA downstream 39840 22868878 ~ 22869139 (+) True G3991
TU4909 lncRNA downstream 437232 23266270 ~ 23345005 (+) True G4057
TU4923 lncRNA downstream 486296 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 486590 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA downstream 486590 23315628 ~ 23319122 (+) True G4058
AMCG00003874 mRNA upstream 79043 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003872 mRNA upstream 287477 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003871 mRNA upstream 300245 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003873 mRNA upstream 325715 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003861 mRNA upstream 717040 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003878 mRNA downstream 15305 22844343 ~ 22859805 (+) True AMCG00003878
AMCG00003877 mRNA downstream 42467 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003879 mRNA downstream 212785 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003883 mRNA downstream 232922 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003882 mRNA downstream 243976 23073014 ~ 23081514 (+) True AMCG00003882
TU4606 other upstream 899983 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1063140 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1274237 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3454504 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4671456 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 881200 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1854362 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2965014 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5233325 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5233636 28062674 ~ 28067786 (+) False G4831

Expression Profile