RNA id: AMCG00003879


Basic Information

Item Value
RNA id AMCG00003879
length 1482
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00003879
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23041823 ~ 23046232 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGAGCCGTTCAGTCAGTCCTTCAGTTCAGACGCTGTGCATCTGGTGACGAGTCAAGGTCTCTGTGTTGGAttataaaggaaaacaatgacCATCAAAACGGAGACGGCCAGTCCAGCTTTAACATACTCCAAAATGCGAGGTGTAGTTGCAATACTTATAGcaTTTATGaaacaaagaagaatgggaCTTAATGACTTCATCCAGAAGCTGGCCACCAACTCCTACGCCTGCAAGCAccCTGAGGTCCAGTCAATCTTGAATCTGAACCAACCTCAAGAAACTGAACTCATGAATTCCAACCCCTCTCCTCCTCCACCGTTCTACAGTCGGAATACTGCTGAAATGTACGACAACATTCTGAACAAGCCTCTGCAGCTGAAACCCAACATCTCTAACTCAGCCAGACACCTCCTCGAGGGCCTGCTGCAGAAGGACAGAACAAAGAGACTTGGCTGTAAAGATGACTTTGTTGAAATCAAGAACCATGTGTTCTTCTCTCCAATCATCTGGGATGACCTGAATGCCAAAAAACTCACCCCTCCTTTCAACCCAAATGTGaCTGGCCCCAATGATCTGCGGCACTTCGATCCAGAGTTTACAGACGAGCCCGTTCCAAACTCCATTGGCTGTTCCCCAGACAGCGCCCTGATTACAGCAAGCATCAAGGAAGCAGCTGAAGCTTTTCTGGGATTCTCCTACGCCCCATCCATGGACTCTtacttgtaatttaaaataacttatgGACTTGCCCGACACTGACAGATTGGTCTTGCACGAGACCCTCCTGGAAGGTGAAATATTTGCACATCGATTGAGGCAGCTTTGTGGCCTTAACTTAAAGAAGTGGTCTGAGTTGATGAGAAGAACTCAACAAGCACAGTTCTCTTTGTGTCCCCAAGATCTGGATGCCGTTTTCCTTTGGGTGAATTTCCTGCAGAGTCTGCTAGCAGAGGAACCGTAACGGTGTCAACAACTACTAATAATTTGTTGGGATCATGAATGTTACACAAGGACTTTTTGCAAGGTGCCTTTTTCCTCTCAAGATCTTTTCTTGATCTGGAGGTCTCATTCTTCAGTGGTTGGctttagaattattttttttgttgttgaactTCTCAATGTGAACAAACAGTTTTGGTGTGGCATGTGGACGTTCTGTGTTCACGGGCCTTGGCATCAAAATGACTTCATGTGGGCTGACACTGCAATATGGGGCATTGATTGCTGCTTCCAATTTTGGAAGATGACAAATTTGCTGTAGATTTCTAATTTCAATAACTTTAGGATGGGATCTAGGATGGGATTAAATCataactttgacccaccagctaATTGCAAATTTTGAAAATCTGTACTTGGTGATGAATTATATATCTCACCAGAGacctatataaataataattgtcaggTACTagttgtaatttgcaatttaggGGATGGGCAAAAGATCagttttaatctggcccttacATGTGTTT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4834 lncRNA upstream 172684 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 272596 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 539994 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 540997 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 636969 22402604 ~ 22404854 (+) True G3907
TU4909 lncRNA downstream 220038 23266270 ~ 23345005 (+) True G4057
TU4923 lncRNA downstream 269102 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 269396 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA downstream 269396 23315628 ~ 23319122 (+) True G4058
TU4928 lncRNA downstream 286369 23332601 ~ 23338238 (+) False AMCG00003884
AMCG00003877 mRNA upstream 158962 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003878 mRNA upstream 182018 22844343 ~ 22859805 (+) True AMCG00003878
AMCG00003876 mRNA upstream 212785 22823770 ~ 22829038 (+) True AMCG00003876
AMCG00003874 mRNA upstream 297096 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003872 mRNA upstream 505530 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003883 mRNA downstream 15728 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003882 mRNA downstream 26782 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003881 mRNA downstream 89216 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003885 mRNA downstream 191114 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003884 mRNA downstream 288944 23335176 ~ 23338241 (+) False AMCG00003884
TU4606 other upstream 1118036 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1281193 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1492290 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3672557 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4889509 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 664006 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1637168 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2747820 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5016131 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5016442 28062674 ~ 28067786 (+) False G4831

Expression Profile