RNA id: AMCG00003881


Basic Information

Item Value
RNA id AMCG00003881
length 988
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00003881
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23135448 ~ 23137241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAAAAAGAGCATGACAGAGCCCACTTTTTAAACACAGCACATGCATACTTTTCGATTGTATACCGTCGGTTTGCTGACCTTTCTTGCTTTAAGGCAGACTTGTTAACTGTGCTGCCATATAGAGAGCAACTTCCATCATGTCCACGGGATCCATCAGTGATGTGGACGAGCTGGTGGAGAGCGACATCCTGAAACTGGGCTCCGGCAAGGACTCGGGCACCTCCAACGACAGCACGGAGGAGAGCTGCAGTGGGGAGGGAGGCTCGCCGACGAAGACCAGGGCAGCTCCGGGGAAAAAACGCAAAACCTCCAGGAAAATGGCCTTGAACGGCGTGGCGCACGAAGGGAAGCAGGTCCAGAGAAACGCGGCCAACGCCAGGGAGAGGGCGAGGATGCGCGTCTTGAGCAAAGCCTTTTCCCGGCTGAAGACAACCCTCCCCTGGGTACCACCGGATACCAAACTGTCCAAACTGGACACCCTCAGACTGGCATCGAGCTATATTGCCCACTTGAGACAAATCCTGGCCAACGATAAATATGACAATGGCTATATTCACCCAGTCAATCTGacaTGGCCCTTTATGGTGGCTGGAAAACCAGAAAATGAGCTGAAAGAAGTGCTGAACACAACCCGATTGTGTGGAACTACAGCATCGTGATTCAACGAGTGGCTTTAAAAACTGATCAAACAACTAaccgaaaaagaaaaaaggaaaaaggaaaaactttagcttttaagaaaataatcaacaaaTCGACACGAGAGGGACCAAAACTTCAGACTCATTCCTCcaaaaaaggttatttaaaGTATGTTAAGTTTATGTTAGCCTTGCTGGATCAAGTGCTGTTGAATGTTTGTTCATATCATGCTAAATGCTTTATACAAAGTTTGCTATTATGTAGCTGCAAGTACTTTTATTAATGACTTTGACAGTCATTTCTGTACAAAagaacacatataaaatatattttctttaatcaag

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0007530 sex determination biological_process
GO:0048536 spleen development biological_process
GO:0060425 lung morphogenesis biological_process
GO:0072162 metanephric mesenchymal cell differentiation biological_process
GO:0060426 lung vasculature development biological_process
GO:0048557 embryonic digestive tract morphogenesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060435 bronchiole development biological_process
GO:0048286 lung alveolus development biological_process
GO:0060766 negative regulation of androgen receptor signaling pathway biological_process
GO:0060008 Sertoli cell differentiation biological_process
GO:0060539 diaphragm development biological_process
GO:0072277 metanephric glomerular capillary formation biological_process
GO:0060021 roof of mouth development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0014707 branchiomeric skeletal muscle development biological_process
GO:0005634 nucleus cellular_component
GO:0070888 E-box binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4834 lncRNA upstream 266309 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 366221 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 633619 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 634622 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 730594 22402604 ~ 22404854 (+) True G3907
TU4909 lncRNA downstream 129029 23266270 ~ 23345005 (+) True G4057
TU4923 lncRNA downstream 178093 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 178387 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA downstream 178387 23315628 ~ 23319122 (+) True G4058
TU4928 lncRNA downstream 195360 23332601 ~ 23338238 (+) False AMCG00003884
AMCG00003882 mRNA upstream 53934 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 69518 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 89216 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003877 mRNA upstream 252587 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003878 mRNA upstream 275643 22844343 ~ 22859805 (+) True AMCG00003878
AMCG00003885 mRNA downstream 100105 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003884 mRNA downstream 197935 23335176 ~ 23338241 (+) False AMCG00003884
AMCG00003889 mRNA downstream 237052 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 273094 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 308581 23445822 ~ 23447419 (+) True AMCG00003894
TU4606 other upstream 1211661 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1374818 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1585915 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3766182 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4983134 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 572997 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1546159 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2656811 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4925122 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4925433 28062674 ~ 28067786 (+) False G4831

Expression Profile