RNA id: AMCG00003882


Basic Information

Item Value
RNA id AMCG00003882
length 2706
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00003882
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23073014 ~ 23081514 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttaaaCTAATGTCACGTCGGCTGTTTTTGGAGCCGACTAAAGGTTGGCATTAGTACTGAATAATCTGAATGTAACAAGGTTGCACTGTTATACGTGCAGTAATACTGTGGGCGGAGAGTCTGCGGCACAGCTCTTAAAAAACAAGGAACCTGTATGTGCTTTGAAGGACAACTAAAAGTTCTGCAGAAGAAGGTGCAACAAGTCTAAACTGCGATGACGATGCTTAACAAGTAACTATTAGTGTTGCAAACGACAGACAAGTCTTAGCAGAAAAGAATGGACCCTGATGGCTGTGGTAAGGTGAATTATGAATACCAGCCTATTGCGAAAGATCGCACTTTGGAGATTTTTCCCCAGAAATGTCTGGAAGCCAAGAAGAAAGgatGTGGCACGCTCATCCTTCTGGCCTCAGTAGTTGCTGCTATCAGTGGATTCATATTCGGCTATGAAATGGGAGTGATATCTGGGGCTTTGCTGCAGTTACAGGAAGTATTATCCCTCACATGTCAGAGACAAGAAATGGTGGTTAGTGCTCTTTTATTTGGTGCCCTATTACTTTCACTTGGCGGGGGATTCTTACTGGACACATATGGGAGAAAGTTTTCTATTATTGTAACTGCCTTCATTATCATACTTGGAAACATAATCATGACATGCGTCGTCTCCTACATAGCACTCATCATTGGTCGCGTCATGGTGGGAATAGCCATAGCACTATCAGGGATTGCATCATGCCTCTACCTTGCAGAAATTGCCCCACAAAATAAAAGGGGGCTTTTAGTGTCCCTGTATGAACTGATGGTCGTTATTGGGGTCCtcttaggttttgttttcagttatgcTTTTGCTTCTGTTTCCAATGGCtggaaatatatgttttgtattgtgaTCCCACCAGCAGTTTTACAAGCCATAACCATGTTTTTCCTGCCTGTGAGTCCCCGTTTCTTGATCAAGACGGGTCAAAGTGAAGCTGCTAGTGATGTTTTGAAAAGACTGCGAGCTTCTTCTGCGGTGGAGGACGAACTGAAGAGCATTCAGACGGCTCTGAAAGAGGAAAGCCAATACAGCTTTTCGGACTTGTTCAGGTCGAAGGACAACATAAGGACTAGGCTACTGATCGGAGTATTACTGGTCTTCTTTCAGCAAGTTACTGGGCAGCCCAATGTGCTGTTTTATGCATCCACTATCCTGAAATCGGTTGGCTTTCACAGCAACGAGGCAGCTACTCTCGCATCTACGGGTATTGGAGCAGTGAAAGTGGCCAGCACTATCCCGGCGGTCTTGCTGGTGGATCGCGTGGGAAGCAAAACGTTCCTGTGCATTGGGTCCATTGCCATGACAGTTTCACTGGCGACTCTGGGGGTCGTGACTTTCCAAAGCCACACGAACTGTATCAGCATCTGCCAGAATCACGCCAGTGTAAACCAAACCCACTGGATATACAATGCAACTACAGACTTTGCAATCAATGGAGAAGGGGTCTTTAAAATGACTGTAAACGCAACACCTGAACTCAGAAACCCCACCTCAGGCAACAGGCTGATGATGCATGATGATGGATGGAGTAATACAACAGGAGAAAGTCCTGCTAAGATTCCTAACACaggtttacaaattaaaaaagtgtctgGTACTTTAAAGTGGCTCTCCCTAGTCAGTCTGCTGGTTTACATTGCTGCATTTTCCATAAGTCTTGGTCCAatgGTGTGGGTGGTTCTGAGTGAAATATTTCCAATGGGGATCAGAGGCAAGGCAATGTCTGCAACTGCTGTAATAAACTGGGGTATCAACCTGATCATTTCAATGACATTTCTGACTGTAACAGaaaaaaTTGGACTCGCAAATGTAATATTCACGTATGCAGCGATGAGCTTTGCACTTCtggtttttgtggttttgtgcaTACCAGAGACGAAGGGACAATCGCTGGAAGAAATATCAAAGAAACTTGCCAAAAAgaacAACTCTGAAGACAGATGCTATTGGACAAAGCCTAAAACTGAAACCTCAAAGATTAAATGTGATAATTGATTAACCACTTTTACCTCAATTTGTTTTGGGAAAtttcacttaaatatatatatatagatatatagatatatagatatatgtgtgtgtgtgtgaagacagAAATTTGTATTCgttcatgtttaaaataagcTGACCTGTGAAGGGAGATTCATCCTTTCTTGTCTCTAACAATGTACCAACCTAATGGttatatactgtttattagttgttgttttttatgttccCCTAGGAAGAAATGTTGAGTGTGCAATgcatattgtgtattgtttatgtGTGAAATCAATGGTGGTGTGAGTAAATGTTTGAGTAGCTTAGGTAGACCATTTTAGACCAGCCAGACTCAGGGAGAGGGTCATCACACAAATGACACAGTGTAGCAGCTGCTGTGAATGGAAGATGTGTCAGATTTATTTCCAAAGGGATTTAGCATAATTTTTGAAAGAATTCCTTGTTGCACTGTATCAGATATCCCCATAGACtacaatgaaatgaaattacTCAATCTAGTATAAATGCCAATGGTGACACTCCAtcctgcaataaatacatatctgaCATTTTGGGTTGTTTATTTTGGGGGTATATATATCAGTACTTGGCAGATGCAACTTTGCCTGCTGCAAGTCTTTTTGGAAAGATGTAATGTTTACCCATCCCTCCTTGCATAATT

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08149 SLC2A12, GLUT12; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4834 lncRNA upstream 203875 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 303787 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 571185 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 572188 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 668160 22402604 ~ 22404854 (+) True G3907
TU4909 lncRNA downstream 184756 23266270 ~ 23345005 (+) True G4057
TU4923 lncRNA downstream 233820 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 234114 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA downstream 234114 23315628 ~ 23319122 (+) True G4058
TU4928 lncRNA downstream 251087 23332601 ~ 23338238 (+) False AMCG00003884
AMCG00003883 mRNA upstream 7084 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 26782 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003877 mRNA upstream 190153 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003878 mRNA upstream 213209 22844343 ~ 22859805 (+) True AMCG00003878
AMCG00003876 mRNA upstream 243976 22823770 ~ 22829038 (+) True AMCG00003876
AMCG00003881 mRNA downstream 53934 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003885 mRNA downstream 155832 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003884 mRNA downstream 253662 23335176 ~ 23338241 (+) False AMCG00003884
AMCG00003889 mRNA downstream 292779 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 328821 23410335 ~ 23423173 (+) True AMCG00003892
TU4606 other upstream 1149227 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1312384 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1523481 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3703748 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4920700 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 628724 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1601886 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2712538 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4980849 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4981160 28062674 ~ 28067786 (+) False G4831

Expression Profile