RNA id: AMCG00003884


Basic Information

Item Value
RNA id AMCG00003884
length 1740
RNA type mRNA
GC content 0.34
exon number 3
gene id AMCG00003884
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23332601 ~ 23338241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCATCAGGATGGGTGTTTACCATCCCATACATATTTTAACCTGTTCTACTACTTACAAGTAGTTTTCCTTGATACTTACTTGTTCTGTTTTAGTGCAGCCATGGCTCTTTCTATCTACTACACCAGTGTCAGTGGCTCCAGAGAGGTAAAACACCAACAAACTGAACTCCTTCAGTACCTGGACTCCATGAAAATCAAGTACAAACTCATTGATATTTCTCTCAGTGCAAGTTTCAAAGAAGAAATGCGCCAAAAGACTGGCAATCCTACTGCAATGCCACCACAGATCTTTAATGGGGAAATCTATTGTGGAGTAAggTTGTATCTTTGTGAGGGCTGTCAGAATAATGGTGCATTCTGCAACTCAAAGAAGTTGGTGGAGGGCGGGAAGTGGTTTTATCTGAAGGACTTCTGTGATTTCTCCCACTTCATTCTGGAATGAGACAGGGGTGAGGAGGGGTGTGGTATCACatgatacaattattttctggtTCATATTTGGTGTAAtggtcattttaatatatagagGCTTAGTTTAGTATTAGATctaacatttttatgttttttttaacatttcaaatattcaatgttcttttgaaatatattttcgaaaataaaaacactcagACAGGCTATCAATTAGCTAAACTGAGGAAATCAATTACAATCCCATCGAGTCAGTGTGAAGAAGTCCTCTAAACACAACCATACAGCTGTTTCTAACGGATGCTTCGCCAGTGTCAGATTGTAAAGGACTGCAGTGTCTATAGCCTTCATACACAGCAGGAAGAAATCATTCTAATCAACACCAtcgttttcacttttttaaatacacaaatttcAGTAAGGTGCATCTGTAGAAATCTCCAGATAGATATGTGCTTCAGAACTGATATTGGGGGTACAAATAgcattaaatgtacatttttattaggaCTTTTAATTCAAAGAAGAAAACCAGATTAGCTCCTTTTGAAAAAGATAAAGTAAGAAAGTCtgattttgtaaaacaatgGAAGCAATATAATAAGTTGTGCTACTAAGGATACATTAAGGATTTGACTAAAAAGATTTGTCCATAAATCTGAGTTGTCCATAAATGTTCTTAAGTCATCAATGTCccacattaaaatatactttcaaTTGCCaagtatgtaaatattttactgcATAACCTGTACAATAGAGAGCTATTGCAGAGGTGAAGAAAATTCAATCTGACTTCAATTCAATCTCGATTAAAAACAGTAGAGACAtctaagtaaatacattaattcagaataaaaaagatttttttgttttgttttacagactTATTTATCCTAGCAGTATCTTTTGTAAGGGagggtacatttaaaaaaaactaacttgCAAACAGAAGGTGGCAGCACTGAGTGAAATTGCTTTCACTGAAAATAGATAATTGAATAGGTTAAGATGAAACAGACTTTCTACATTTCCTGGAGTAAATTCTAGTTTATTCTATGAGTGCATTAACTATGTAGGTAACGTTTCCTTCATACTGATTTGATGCTgcatttttgttcagtttacaCAGCAAAAGCCTCTTAAGGTTAATCAATCTTCACCCCTTGCTTATTCAATTGATATTTGAAGTCACTTGATAATACTTACATAACAGGAAatcagaaatcaaatcaaattaaaaatagttcTACATACCGATAAAGCAGTACCGAGCAAACAGTAATAAACTCACAATTAAACACCTCCAAA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4923 lncRNA upstream 12501 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA upstream 16054 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA upstream 16054 23315628 ~ 23319122 (+) True G4058
TU4834 lncRNA upstream 466037 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 565949 22728722 ~ 22769227 (+) False AMCG00003874
TU4936 lncRNA downstream 23795 23362036 ~ 23362447 (+) True G4071
TU4956 lncRNA downstream 27950 23366191 ~ 23369996 (+) True G4089
TU5003 lncRNA downstream 183632 23521873 ~ 23531567 (+) False AMCG00003891
TU5055 lncRNA downstream 429167 23767408 ~ 23767759 (+) True G4162
TU5056 lncRNA downstream 435499 23773740 ~ 23774052 (+) True G4163
AMCG00003885 mRNA upstream 21299 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003881 mRNA upstream 197935 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003882 mRNA upstream 253662 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 269246 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 288944 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003889 mRNA downstream 36052 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 72094 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 107581 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003890 mRNA downstream 121599 23459840 ~ 23520587 (+) True AMCG00003890
AMCG00003891 mRNA downstream 183585 23521826 ~ 23533875 (+) True AMCG00003891
TU4606 other upstream 1411389 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1574546 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1785643 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3965910 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 5182862 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 371997 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1345159 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2455811 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4724122 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4724433 28062674 ~ 28067786 (+) False G4831

Expression Profile