RNA id: TU4929


Basic Information

Item Value
RNA id TU4929
length 4801
lncRNA type sense_over
GC content 0.38
exon number 3
gene id AMCG00003884
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23332601 ~ 23338241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaacaatagctcACACACTCCTTTAATGGTTGCCTCCTAAATGCAGCCCTTTAAGAGTTATGTAATGTTGCCTGTGTGTCACAGCGGCAGGTACGTCCATTGAATAGAGGTGTTTAAATACACACTTTAATCCGATGACTATGGAGAATGAAACGCTGGCTGTAGATGTCATGACTTTGAAGATAATACAATCAATGGACAGAAAAGTTCAGCCGGCGATTTTCTCAGCTGGTTAAACACTGTGCCTATAAAGGTACCAAAGACAAGTAAACACTCGTATCCGACTCTGTAATGTAGTTATTTGATATGCACCTCCACGGTGTTCATCCCCGTCTGCCTCCGGGTCGGTGTCGTCCATGTCGGAGCTCGTTTGTGGACCTGCGCTGCAGCGGGCTGCCGGCACACAGGCTCTGCACTGGGGTTAATAATGTGCGTTACTGAGGGGGGAAAGGACTCACTGCCTGTTGACTCAACGTCTTGCAATACCAGCTCTGAGGAGGACGGAGGACGGAGGACGGAGGACGGAGGCCGGGAGGGGAGGGTCTCGCCACGCTgtttgcgcagatctgcagaatcgcgcagatcccattggtggagcagcaaACCTGGACTATAAAAACATGAGTGTGGtgaatgtattaaatacttaataataatctcTCGGTGTGAATGTAATACACACACTATAGGCTCCCACACATGCAAAGGTGTTagggttttgttgttgtttttcttcatgcaTGCAGCCTGAcgtatatatttgtatgcaagCCCGCTTCCTTGCTGGTGTGGATATAAGGAGCGTATTCCTCACACATTGCtactgtattcatgtttttccaaAGCAGACGAAGAGTTGCAGCTCCTTCCTAGATACCTGGTCATTCAGAGGACAGACATCTATTCACCTAGGCTGGAGACACTATATAACAGGGTTTAGAAACGCAAACAAATACTCCCCCTCgattattatattcattatcGACGTCTGTTAAGGTCATGATAAAGAACAAATCTCACAttcgtgttgttgtttttttctgctaaaagaaagtgtgttttaaatactgGGTGAGCATACCTATGGTCTAATGAATAATATGTGAATGCAGTTGTATTTGAAAGCATCTACAcagctttcatttgaaacaatgttattgaGAGATGTATTGCCTTAATACATATGGGTCTTGTTAGTTGAACACTATTCAGCCAAATGAAAACTGATTTCAGTATATTGAACTAAGTTGAGAAAGGGGTAGTGGAAGTAGACTGTTATATATAGTCTATAGAATCAGTCAAACTTCCACTAGAGAGTATTGTTCTTATTAACAATATTGTGTTAAACTATTACTGTGGTGTATTGTATAAATTGGTAAATCGTATCAGTTAATCTCAGAGTTCAATGTCATTCCAATGTTATTCCAGTAAGATCTGTATAACAATTGTTTTCTCTGTGGATTTTTGCTGATGACTTTAGTTCAGTTGGATTTCCAGACAAGCAGACCTCACGTCCTCAGCATGACTTCCTCTCAGATATATTGAGATAGAGATTGCATAACCAGCCTTAAAAGTTCATCTTAATTGTTGTGACACAGTGCTCTTCCCATTGttgcaaatataaaaaacatcttTGTGCATTACAAGCACAAAAGCATAATAGAGATTTATCATTTTAGGTCATTCTTTGCTGACATATTTCTGTGATTCAAGTTTTTGCCTTGtaacacattcattttgattAGTGTCAATGGGAATGTCAGAAATGTCACAGTGCATGGGAAATTAACCATTTATCATGGAGACTTCATGGCAAAGCTGCAGATAAGTCTTTCTGTGGGCTGACAGAGATGCCCAGTCCTACTTCTTTTCTAAACCCCACTGAAATGTCTTTCTCTTTTGCTACTCAGCTTTGTGAGGGAGAGTCAAAAGTATGTTGTTTATGACTTAAGAGCTTGTTACTTCTGGTAAGTGCATGAAGTAAATGCATGTGGTCGGGCCCTTGGCTGTCGGCCCCGGAGCTTAGAGCAATCTCCAAATGcctttgtaattttgtactgcTGCTCTGGGGGAATCGCATAAGGACAGACAACCACCAGAGTGGCCTGAGATTGCAGAGTCTCCGCCATCTAGCAGAGCAAGTTCTCGACTGACCCAGGTCTGACCAACATGGCATCAAATCTCCTCTTCACAGGTGAGACAGCCCTGGTGAAGTAACCCTCTCCGTCACAACCCCTATCAAGCAACTTCTCCCCTCATCGTCCAGTTTTTCAGTGGcaaaattgttgtttttcactgttcacttttcagaaatgttggttcttgaaaaaaaaaaaaatccagacatTTTAAACTATGTGCTCAGCAtcctaattattttcaaaatcagtgATATATTGTTCGCTGAGCTTATGGAGTTCTAACACTACAAACCTCTCTCTTGTTGACTCTTCACTTGAAACATGGGGATGCTAATGTGAGATAACATGCAGGTGAGACAGTTGTTTGCATTTGGGTTGTGAGTATACATCATGTGTGTTTAGACTGCAGGAGGCAGTGCGAGGAGTGGCCAGCCATCAGGATGGGTGTTTACCATCCCATACATATTTTAACCTGTTCTACTACTTACAAGTAGTTTTCCTTGATACTTACTTGTTCTGTTTTAGTGCAGCCATGGCTCTTTCTATCTACTACACCAGTGTCAGTGGCTCCAGAGAGGTAAAACACCAACAAACTGAACTCCTTCAGTACCTGGACTCCATGAAAATCAAGTACAAACTCATTGATATTTCTCTCAGTGCAAGTTTCAAAGAAGAAATGCGCCAAAAGACTGGCAATCCTACTGCAATGCCACCACAGATCTTTAATGGGGAAATCTATTGTGGAGACtatcctttattttttcaagcaGTGGAGGATGGAAAAgtggatgcatttttaaagaggaAACATTCATAAACTTGCCCCACAGCAAGAAACTTCAGATGTGAGCACCCCTCAAAAAAATACTACCTTTGACTAATACATTAAgccaaaaaggaaaaatatgaattaaatacattgaactAACATTCAGTTTgatataataaacatgtttttatttttttcattgtgctGAACAATGTTTACTTATTAATACTATTTTGGTTGTTTACTGTGAAGAAGACAATTTAATGAAATTACTAGGATTCCAAGTTATTCACAACAGCTGCACAAATATAGACATTCTGACCACTCCGACTATTGACCACAACTGTCCTGTTCTCCCTCCCTGTTAAGTGAGCAGCTCTATCGGCCAGATTCCCTTACTTAATCTCTCACGACAGGTGGCAGGCTGACCAATCAAAACGGCTAAAGTCATGaccttctctctccccagggTTGTATCTTTGTGAGGGCTGTCAGAATAATGGTGCATTCTGCAACTCAAAGAAGTTGGTGGAGGGCGGGAAGTGGTTTTATCTGAAGGACTTCTGTGATTTCTCCCACTTCATTCTGGAATGAGACAGGGGTGAGGAGGGGTGTGGTATCACatgatacaattattttctggtTCATATTTGGTGTAAtggtcattttaatatatagagGCTTAGTTTAGTATTAGATctaacatttttatgttttttttaacatttcaaatattcaatgttcttttgaaatatattttcgaaaataaaaacactcagACAGGCTATCAATTAGCTAAACTGAGGAAATCAATTACAATCCCATCGAGTCAGTGTGAAGAAGTCCTCTAAACACAACCATACAGCTGTTTCTAACGGATGCTTCGCCAGTGTCAGATTGTAAAGGACTGCAGTGTCTATAGCCTTCATACACAGCAGGAAGAAATCATTCTAATCAACACCAtcgttttcacttttttaaatacacaaatttcAGTAAGGTGCATCTGTAGAAATCTCCAGATAGATATGTGCTTCAGAACTGATATTGGGGGTACAAATAgcattaaatgtacatttttattaggaCTTTTAATTCAAAGAAGAAAACCAGATTAGCTCCTTTTGAAAAAGATAAAGTAAGAAAGTCtgattttgtaaaacaatgGAAGCAATATAATAAGTTGTGCTACTAAGGATACATTAAGGATTTGACTAAAAAGATTTGTCCATAAATCTGAGTTGTCCATAAATGTTCTTAAGTCATCAATGTCccacattaaaatatactttcaaTTGCCaagtatgtaaatattttactgcATAACCTGTACAATAGAGAGCTATTGCAGAGGTGAAGAAAATTCAATCTGACTTCAATTCAATCTCGATTAAAAACAGTAGAGACAtctaagtaaatacattaattcagaataaaaaagatttttttgttttgttttacagactTATTTATCCTAGCAGTATCTTTTGTAAGGGagggtacatttaaaaaaaactaacttgCAAACAGAAGGTGGCAGCACTGAGTGAAATTGCTTTCACTGAAAATAGATAATTGAATAGGTTAAGATGAAACAGACTTTCTACATTTCCTGGAGTAAATTCTAGTTTATTCTATGAGTGCATTAACTATGTAGGTAACGTTTCCTTCATACTGATTTGATGCTgcatttttgttcagtttacaCAGCAAAAGCCTCTTAAGGTTAATCAATCTTCACCCCTTGCTTATTCAATTGATATTTGAAGTCACTTGATAATACTTACATAACAGGAAatcagaaatcaaatcaaattaaaaatagttcTACATACCGATAAAGCAGTACCGAGCAAACAGTAATAAACTCACAATTAAACACCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4923 lncRNA upstream 9926 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA upstream 13479 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA upstream 13479 23315628 ~ 23319122 (+) True G4058
TU4834 lncRNA upstream 463462 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 563374 22728722 ~ 22769227 (+) False AMCG00003874
TU4936 lncRNA downstream 23798 23362036 ~ 23362447 (+) True G4071
TU4956 lncRNA downstream 27953 23366191 ~ 23369996 (+) True G4089
TU5003 lncRNA downstream 183635 23521873 ~ 23531567 (+) False AMCG00003891
TU5055 lncRNA downstream 429170 23767408 ~ 23767759 (+) True G4162
TU5056 lncRNA downstream 435502 23773740 ~ 23774052 (+) True G4163
AMCG00003885 mRNA upstream 18724 23237346 ~ 23313877 (+) True AMCG00003885
AMCG00003881 mRNA upstream 195360 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003882 mRNA upstream 251087 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 266671 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 286369 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003889 mRNA downstream 36055 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 72097 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 107584 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003890 mRNA downstream 121602 23459840 ~ 23520587 (+) True AMCG00003890
AMCG00003891 mRNA downstream 183588 23521826 ~ 23533875 (+) True AMCG00003891
TU4606 other upstream 1408814 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1571971 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1783068 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3963335 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 5180287 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 372000 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1345162 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2455814 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4724125 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4724436 28062674 ~ 28067786 (+) False G4831

Expression Profile