RNA id: AMCG00003885


Basic Information

Item Value
RNA id AMCG00003885
length 4402
RNA type mRNA
GC content 0.42
exon number 21
gene id AMCG00003885
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23237346 ~ 23313877 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tagtataaataataataatgaggaggaggaggaggaggagaagacgAAAATGAAGAAGACAAATAAGAAGAATTCCTATACAatatttGAGTGGATCACAATCGAAGCCATTAGCATCAGAAGCCCCATGGAAAGCTCACAAGATCTCAATGAACAATCGACACTGGCAATTTCTGAGATTGTGaccaaaatgtataaacatttacacaacTGTGTTAAGGTAAAGAAAACGCACAGCGAATCACATGTTTCAGAGCCTTCAAATACCAGGTCTATGGAAATGCAGGACTTAGCCAGTCCTCATAATCGAGTAGGCAGTACTGACACTCCTGGCTCCAAACTGGACAAGTCTAACCTCAGTAGCTCTTCGATTACATCCAATGGAACAGGAGTCAAAACAGAGCCAATGAACAGCAGTGaaactgcaacaacaacaggaGATGGAGCACTTGACACGTATGCCGGGTCAGtaATAACAAGCAGTGGTTACAGCCCCAGATCAGCGCATCAGTATTCTCCACCCCTGTACCCTTCCAAGCCATACCCACATATTTTGTCGACACCAGCAGCTCAGTCAATGACAGCCTATGCGGGGCAGACCCAGTACACTGGAATGCAGCAGCCAACAGTGTACACCGCTTACTCCCAGACAGGGCAGCCCTATGGACTATCCACGTATGATTTGGGTGTCATGTTGCCGGGCATCAAGACGGAAGGGGGTCTCTCTCAAACACAGTCCCCTTTACAGACAGGCTGTCTTAGCTACAGCCCAGGCTTCACTACGCCTCAGCCAGGCCAAACTCCTTATTCCTATCAGATGCCAGGTTCCAGCTTCACACCATCTTCGGGCATTTATGCAAGCAACAATTCTGTGTCTAATTCAGCAAACTTCAGTAGTTCACAACAGGATTATCCTTCCTACACAGCTTTTGGCCAAAACCAATACCCCCAGTACTATTCACCCTCCACCTATGGTGCGTACATGACCTCCAACAGTACAGCTGATGGGACCTCTTCAGCTTCATCCACCTATCAGCTGCAAGACCCTCCCCCAACACTCACGGGCCAAGCGGCCGAACTCCACCCAGGGGACTTTGATACAGTACAGAGCCCCTCGACACCAATCAAGGACCTGGATGACAGAACATGTAGGAGTTCTGGGTCAAAAGCACGGGGAAGGGGGAGAAAGAACAATCCATCACCGCCCCCCGACAGTGATCTGGAGCGAGTGTTTGTATGGGATTTAGATGAAACTATCATCATATTTCATTCACTTCTTACTGGATCATATGCACAGAAGTATGGTAAGgatCCTCCTATGGCTGTGACGCTTGGTTTACGGATGGAAGAAATGATCTTCAATCTAGcagacacacatttattttttaatgacttggagGAATGTGATCAAGTTCACATAGATGACGTCTCCTCGGATGACAATGGCCAGGACTTGAGtACTTACAGTTTTGCAACTGATGGCTTCCATGCAGCTGCAACAAGTGCAAACCTCTGTCTGGCCACGGGTGTGAGAGGCGGGGTGGACTGGATGAGGAAGTTGGCATTTCGCTACCGAAGAGTAAAAGaattgtatagcacatacaaaaacaatgttgGGGGGCTGCTCGGACCTGCCAAAAGGGATGCGTGGCTGCAGCTACGGGCTGAAGTGGAGGCTCTGACAGACTCCTGGCTGACTAATGCACTTAAGTCATTGTCCATCATCAGTTCAAGaAGTAACTGTGTCAACGTATTggtaacaacaacacaactcaTACCGGCACTTGCAAAAGTACTTTTATACAGTCTAGGATCAGCCTTTCCGattgaaaacatttacagtgcAACTAAAatagGAAAAGAAAGCTGTTTTGAGCGTATAGTGTCCAGGTTTGGCACTAACATTACATATGTTGTCATTGGAGATGGGCGAGATGAAGAGCATGCAGCTAGCCAGGAAAAGAGAGTTGCTTTGAGCGCATAATGCAAAGGTTTGGCAGAAAAGTAGTATATGTTGTAATTGGGGATGGTGTAGAAGAGGAACAGGCAGCGAAAAAGCACAATATGCCCTTCTGGAGGATATCGAGTCACTCAGACCTGCTGGCCTTGCACCAAGCACTGGAACTGGAgtacttgtaattgtattgtaacgCTGGAAGtcccttttttatatatatatatttaaaacaaagtacactgcgatttgttttgtctgtgattCTTAACCTCTGGCTTTAAACTATGAACTGTCTTAAGAAGACAAAGACTCTTCTCAAAAACAGGAGCATGGATGGCCAGATGAAGTCCTGTTGTATATCAGATCTGTACAAGGTCTTACGTCAATAAATGCGATTTTTCTGAAGCATAGATGTGAAGGACAATGCTGGTACACCCCCCCGACGAGATGAAGCTTTCTGCGATACTTCAGTGGACAGATTTCACGTGACAGATGGACTGCACCTCTTCTCTCCAACAGGGTCGCGGTTCCCAGCACTCCTCATGGGGAATATATCCTCAGCATTTTAAGCAAACATTTACCTACCTAACCCAGCAAAACTGGCAATAGAAATGCACTCCAAATATAATGACAATCAAGTCTAGAACTATAAtttgtgtaaattattttagttaCTAGTTTAATGTGGACGtggatgtgtttgagagagagagacaatttTTTTGTAAGTTTTGGCAAGCAGAATGTGTATAATGATTTGTTGTgccttaaaaatgaaaaaaaagacagtttgTGTGTTAccttgtaattttgtttaaggacaaaaaaaaatatgtagataAAATTCTTTGTGATAATTTTTTGACAAGACCAAATTTCAAAATTATAAGATTTACAGTTCTGATTTCAAAGCAGAATAAGCATCAGCTGGAGCAAATGGCAAATAAAGGAGAGTTTCGTGTTTTATCTGCATCTCGGTTGAATAAGTGTCCCTTTCGTGGAAGCAGCTACCAAGAGGACATTCAGTGCATCACCTGAAGGCAGCTTTCAAAATACACCCGATGCATAAAAGCACTTCGATGTCAATTCAGTGAAAGTTCTCATTCAAAAGTGTCAAGAAGATCAATATTACAGGCAGATGCTCATCCCATAAAATTGTTTCCGGTTGTGTGTGCAAAGCTTGTTGGTCCCAGAACTCTGGCTATAGGTATTGTGAACTATCAGAATGAATCCATATTCACAGCAGCACATTATAAAGGATCCCCGTACGGCAATATCTCTGTGTACAGAATGCGTTCCATCCTTACTGTATTACTGTAACGGGAGAGTGATGCTCTCTGTTCAGAGCCTGCAGAAGAGCTTGGAGTTTTATGAAGACCTCAAATGTTTCCCACAACTTCATCCGTCTTCAAAGCTAAAATGGTTCTCGATTATTTTAAACGTTCAGCTTTGGAACTCCCCTGGTtggtcttttttgtattatgtctCAACATTTTGTCTCCAAGACAGTATGGACAGGTCTCATGACAGGTTTATTTCCTCCtttgataaataaattgaaagcacttttaaatggataaaaataataacatgcaaTCTTAATTTACACATCGGATGCCTCACTGTTTCCTATTAAAGAACTGCAAACCTTTATGAATCCAGTTTAAGTGATCTTCAGAATGTGGCCTTTGAGGCAATGTAGAGATTTCGGTTGATGTCTGTGGAAGCAGAATAGCCCACTGATTGGACCCTTTTGGAGTGTTATATCAGGAAATAAAGGGTCAGCatcagtggtctccaaccctggtccaaTCACTTAATGGTATGGGTCACCCTGAATCACCTGTTTCTTAATCCTTTCAACATACCCGAGTTATTCATCAAATTAAGCAAGTCAGCTCTTGCTTTGAGAAGCTGAAGATCTTCAGAAAATTCCTTTACCAAGACACCTGCTTCACTGATAAGAATTAAATccttacatgtttatttatttggtgaGAGAAGGGTGATTTCTAAAACCTGCTGGGTTGTGGCTCTCccggaccagggctggagacagCTGGTCCACACGCTATTCCTCCCTGGCTGTTGTATTGTGGTGGTTGAAAATCAAATATGGGTTATGATGGAACATGAAACGATTATCTTTACAGACCTTGAAATTATGCCACCACTCCAGATCAGGTATTGGgtcttcatttaatttcctgttcaATTTTATGTATCCAGTCAAATGTATCCTGGTGCACGAAATGCAATATTAACCTTGAAATCCTGaatactgtgtatattttaatggtaACCAAAGGGGGGTATACATTAACTGCAGCTTTATATTTTAACTGCAATGTTACTTTAAACTACTGTACAAAAACCTGCTATTACAATAAAAGCAAAGACAACTTATTTGCTTCATTTgccacaaagaaaataaagacagaaaag

Function

GO: NA

KEGG:

id description
K17622 EYA4; eyes absent homolog 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4834 lncRNA upstream 368207 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 468119 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 735517 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 736520 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 832492 22402604 ~ 22404854 (+) True G3907
TU4923 lncRNA downstream 1457 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 1751 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA downstream 1751 23315628 ~ 23319122 (+) True G4058
TU4928 lncRNA downstream 18724 23332601 ~ 23338238 (+) False AMCG00003884
TU4929 lncRNA downstream 18724 23332601 ~ 23338238 (+) True AMCG00003884
AMCG00003881 mRNA upstream 100105 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003882 mRNA upstream 155832 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 171416 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 191114 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003877 mRNA upstream 354485 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003884 mRNA downstream 21299 23335176 ~ 23338241 (+) False AMCG00003884
AMCG00003889 mRNA downstream 60416 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 96458 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 131945 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003890 mRNA downstream 145963 23459840 ~ 23520587 (+) True AMCG00003890
TU4606 other upstream 1313559 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1476716 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1687813 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3868080 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 5085032 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 396361 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1369523 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2480175 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4748486 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4748797 28062674 ~ 28067786 (+) False G4831

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044313 False 2890 mRNA 0.48 20 NC_007134.7 31439713 ~ 31512496 (-)