RNA id: AMCG00003888


Basic Information

Item Value
RNA id AMCG00003888
length 999
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00003888
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23316206 ~ 23319144 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGGCGGGAGGGCGAGCACGCTGCTTTTTATTTCAAGTAGAATTTTATATCAACTTAATCTATAATCAATAAAGTCGAATAGAAAGTGAAGCAGACATTTTCTACCAACCATATGGACGTCTGTCTATTTTAAACAGATGCAGATTTGGGTAGCATTGAATTAATCACACGTGCTTAAAAACACACGTTGTTTTCTAGTTGGGCAACTTGTCCGGCAACTAAATGTACAGCCTGCTCGGGGTCCTTCCTCTCTGGGCGCTTAAAATAATGACGTCGACGCTGTGACGTCCTCTTTTTCCGCTGTCAGAGAGGAGGTTTGGCAATTTAAGTCCAACATCCACCGATAATCTACAATGGCCGAGGAAGGCATCGCTGCTGGAGGTGTGATGGATGTTAACACTGCTCTCCAGGAGGTGCTGAAGACCGCACTGATCCACGATGGCTTAGCCCGCGGCATCCGCGAAGCTGCCAAAGCGCTGGACAAGTAAGTGCTGTCCCTCCGAGCCCTCAGTGCGCAGGCGCGGGCCGGGGTGTCTGTGCTGAAGACTGCGACGCCAAGCCCATCTCTGTGTTCTTGCTGGCAACTGTGATGAGCCCATGTATGTGAAGCTCGTGGAGGCGCTCTGTGCCGAGCATCAGATCAACCTCATCAAGGTCGATGATAACAAGAAGCTTGGTGAGTGGGTCGGCCTCTGCAAGATTGACAGGGAAGGCAAGCCACGCAAGGTTGTTGGCTGCAGTTGTGTTGTCATCAAGGATTACGGCAAGGAATCTCAAGCCAAGGATGTCATTGAAGAGTACTTTAAGGCCAAGAAATAATGTGTGAATAAACGCATTTGAAACAGAAGCTGACTGGTGTGGTTTGTAGAATTTGATCCTGTACCTCTACAGTGTAGGTCTCCTGCTCAGTAGATGAACATGCATTGCTGGGTGTGCAAAACTAAAAGCCAGAGGGAATACATtgatgcaataaaatgtaaagtgtaaagtAGTTAAT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02951 RP-S12e, RPS12; small subunit ribosomal protein S12e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4887 lncRNA downstream 200521 23045315 ~ 23115685 (-) True G4039
TU4843 lncRNA downstream 459801 22856026 ~ 22856405 (-) True G4000
TU4826 lncRNA downstream 544422 22771572 ~ 22771784 (-) True G3984
TU4721 lncRNA downstream 956110 22359785 ~ 22360096 (-) True G3898
TU4706 lncRNA downstream 1091113 22224855 ~ 22225093 (-) True G3885
TU4978 lncRNA upstream 80717 23399861 ~ 23423473 (-) False G4101
TU4977 lncRNA upstream 101854 23420998 ~ 23423473 (-) True G4101
TU5017 lncRNA upstream 235132 23554276 ~ 23554524 (-) True G4130
TU5049 lncRNA upstream 421441 23740585 ~ 23743970 (-) True AMCG00003896
TU5051 lncRNA upstream 421441 23740585 ~ 23743970 (-) False AMCG00003896
AMCG00003880 mRNA downstream 226610 23082938 ~ 23089596 (-) True AMCG00003880
AMCG00003875 mRNA downstream 514977 22790248 ~ 22801229 (-) True AMCG00003875
AMCG00003870 mRNA downstream 758319 22535586 ~ 22557887 (-) True AMCG00003870
AMCG00003869 mRNA downstream 784382 22515779 ~ 22531824 (-) True AMCG00003869
AMCG00003868 mRNA downstream 807689 22493463 ~ 22508517 (-) True AMCG00003868
AMCG00003887 mRNA upstream 3185 23322329 ~ 23333559 (-) True AMCG00003887
AMCG00003886 mRNA upstream 23100 23342244 ~ 23359840 (-) True AMCG00003886
AMCG00003893 mRNA upstream 211153 23530297 ~ 23533835 (-) False AMCG00003893
AMCG00003895 mRNA upstream 323660 23642804 ~ 23653555 (-) True AMCG00003895
AMCG00003896 mRNA upstream 423899 23743043 ~ 23757796 (-) False AMCG00003896
TU4276 other downstream 3809453 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 3871463 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 3890840 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 5163825 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 5371264 17942577 ~ 17944942 (-) True G3181
TU5013 other upstream 210375 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other upstream 210375 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other upstream 210375 23529519 ~ 23533882 (-) False AMCG00003893
TU5211 other upstream 944763 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 968987 24288131 ~ 24295776 (-) False AMCG00003909

Expression Profile