RNA id: TU5015


Basic Information

Item Value
RNA id TU5015
length 3059
RNA type TUCP
GC content 0.46
exon number 2
gene id AMCG00003893
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23529519 ~ 23533882 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGCGGCTCATCGGCGCCGTTACTGCGGACCCGGGCTGCGGCGGGAATGGCGGGGAGTCCGGCTCGGGTGTTTGCAGCCCTGCTACCGGCTGGCGATGTCTGCCGAAATGAAAACGAGCCGGCAGCGGGCTGGGTAGCTCGGCGGCCcgctcagcagcagcagcagcccggCCGGGAGGTCCAGGTCAGCGGGAATGCCGAGCTCTCCGCTCCCCCGGACAGAGCCCGCCTGTCGGCGCGGGTGGGCAGCAGGAAGGAGTCGGTGGCCGAAGCCAAGAGCAGCGTCTCCCGGCGGCTGGAGTACATCCTGCAGAGCACCCGGCTGCAGGGGGTGAAGGTCGGCAGCTTGTGTCTGAGTCGTAGCTTTGAAATCCGGGATGAATCGCATTTGGAAAAGTCCGAGACACGCATTGCTACTCGCTCTTGTACTGATTGCCAGTGAGCTGCAGTGGACAGTGCAGTGAGCTGGCGCCTGCATGCAGGCTGTGTTGCACATGTGAAGTTGTACATTGCATGCCAAACATCTGTCTTTCCATATATACGTTATGTTCCTTTTTTGTTATCCGGTGTAATTGACTGTGCATTGCTGTTTTATCACTTTGCTTCCAACTTTGGACTATGCACTGCTCAGGAAGTCGGTGAAAGTTTCAAATCCCACATTTCTATAATCCTGTGTTGTGCGTGTTGTGTTCGCAGGAGGAGCATGTTACTGTGACCAGGGATATCCGAAGAGTCGAAAATGCGTACTATATGGAAGCAGAAGTCTGCGTTATATTTACGGACTTTGTGAAGATGCAGAACGTTAGCAATTTACTGGTGGAGAAACTTGACAGCTCAGTGACCGTCGGCACCCCAGAGTTTTATCACACCTCTGAGTGCCTCCAAAGACTGAGGTAAGACTGACAGATCGACTGTGCATCTTTGTTAGTCTTAAATGACAGAATTATTATGTCTGTGTTTGGCGGGGGGGGGAGAACAATCTTGAATTCAAAactcaattacattttagtaaagctcagttttattaaaaagtgCCAAACGTACAAGCACTGGAGACAAAAGCTTGGAAACGACCACataacaatcaatcaatcatacTAACTCTAAATAGCATGGATCGGctgtcataaaataaaaaaagaaaatcaaaacctttttcttttgcagatgcttttgttttattagtctgttaattgaaaatgctgcaaatcagaaatgtgaaaaaagtgcTTGTGTTTTTCCTAAGCTGCAAAGGTTTGTTAGCATGTCTACACTGAATTTTTCATGAAAAGCAGCTGTGAAGACCTGTAAAATCAAGAAACAGCATGACTTCTCTTAGCTGGGGGCCTGCAGGGTGCACTCACACAGTGatcaacattatttatttggtgaGCATTAGTCTGCCAAACTTATCTTTTTATATCCAAGAGTGAAGGGGTGGCACGGGGGCAGAGGAACTATGTCACCTTTTACAGTGCAAGGCAAATGCTCCACATTGGAATGACATCAGTTGCATTTTCCAAGACCATTTTACCCCCTGCCTCATATCAGTTTATTCTTCACATTTAGCAAAAGATCAGGGATCTCACGACTGTTAGATTGAGATGTTGAACCTTGTCATGCCAAGATGTGTAACTAACAGAGGGGTCTTAAAAATGATGGAATTGTAAGCCCCCCCAAAAACTCAGATTCTCTTTGGTTGTTAAGCCATATCCTAAAAAGCATTCTTGTTTGTTGATCTAGAACAGGTGCTGCAATAATTTTGTCCATCACTCATTGGCATTCACACTCCCTGGTGTTGGGCAGGGCCAGTCAACTGCAGGTGATATCCACAGTCCTGCCGAAGTGCCCCTCCCCCTTGGTTGTGCTGTGTGAACCCAGTCAGAGATCAGCTTTGCTGGAGCTCCATTCCTCTGTGATTCAGTAGCTCAGAAATGTCCTCTGGTTAGGTGTTACAGGGTCACAAAATGGTGATGAAAGGGGAGAACTCCTCTTCATTCATTCTCTTTTCCCCTCAGGCGGCAGGCGTGTCTGGCGGCAGTGGCGAACGCGCGGCACAAAGCCAGGGAGGTGTGCCAGGTGGTGGGGCAGGCCTTGGGGAGACCTCTGCTTATAAAGGAAGAGGAGACCAAGGAATGGCGGGGGCAGAACGAGGATGCGCCCGATCCAGAGACGCACACTTTGCAGCAGAGGATCGACAACGCAACGTTCTTTGTAACCTCTGTGGTGTTTGTCTCATTTGAAATCaaggcaaaagaaaaaggaaagaaaaaaacttgatatttatgtttaaagattttttatataataatgtgtgtgtgtatataatttaaagatcggttacaaatgtatatagtaaaaaaatacatatttttataaatccGAAATGTACCTGAGGAATTAAATATGTTGCAGTCCCTTTACATTGTTGTCCTCTACAAATCTGTAACATTTTGGTTGGGAGACAGCAGTGCAAGTGGTTTAAAGACCACTTTATAAATCACTTACActcatataattacaatgccACTATGCATACACTGTCCAGGGCTGAGGGCTGCCTTTACGAAGGCAGATGTGCAAAGTTCAAACAGTATAACGCACCAGGGAATAAAGGTAgatcagatgtgtgtgtttggttgggGAGCTTTCAACAGAAGGTAGAAGCATAGCCACCTCTTCTAAATGCAGCTCTTAACATTGTAATGTCTCCTTTAGTTGCTCTGACATCATAATAGCTGAAATAAAGGGAATTGAAAGCCCCTGGGCAAAAGGCAGAGATGTAAACCTccaaaataaagcataaatggTTTGTGTTGTCAGTTATCGAAATATTGGGATTATGAAGTGGAGAAAGTATaacattcattctcctgtaaagCAGTAAACTAGTTTTCCCACAATTCACATATGAGTTGGGGGGAGGGGAAGTCTGAGAAGCAGGCACATCTTGGCTGGGGCCTTTTCATCAGTCATCAGGGAAGACTTCCTTCAGCCAGGACTTCATAATGAATTGTTCACCATCAAAATGACTAAAATAATGGTCCAGCGTGGGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4978 lncRNA downstream 106046 23399861 ~ 23423473 (-) False G4101
TU4977 lncRNA downstream 106046 23420998 ~ 23423473 (-) True G4101
TU4887 lncRNA downstream 413834 23045315 ~ 23115685 (-) True G4039
TU4843 lncRNA downstream 673114 22856026 ~ 22856405 (-) True G4000
TU4826 lncRNA downstream 757735 22771572 ~ 22771784 (-) True G3984
TU5017 lncRNA upstream 20394 23554276 ~ 23554524 (-) True G4130
TU5049 lncRNA upstream 206703 23740585 ~ 23743970 (-) True AMCG00003896
TU5051 lncRNA upstream 206703 23740585 ~ 23743970 (-) False AMCG00003896
TU5052 lncRNA upstream 206703 23740585 ~ 23743970 (-) False AMCG00003896
TU5050 lncRNA upstream 208206 23742088 ~ 23743970 (-) False AMCG00003896
AMCG00003886 mRNA downstream 169679 23342244 ~ 23359840 (-) True AMCG00003886
AMCG00003887 mRNA downstream 195960 23322329 ~ 23333559 (-) True AMCG00003887
AMCG00003888 mRNA downstream 210375 23316206 ~ 23319144 (-) True AMCG00003888
AMCG00003880 mRNA downstream 439923 23082938 ~ 23089596 (-) True AMCG00003880
AMCG00003875 mRNA downstream 728290 22790248 ~ 22801229 (-) True AMCG00003875
AMCG00003895 mRNA upstream 108922 23642804 ~ 23653555 (-) True AMCG00003895
AMCG00003896 mRNA upstream 209161 23743043 ~ 23757796 (-) False AMCG00003896
AMCG00003900 mRNA upstream 226720 23760602 ~ 23786763 (-) True AMCG00003900
AMCG00003899 mRNA upstream 289895 23823777 ~ 23845018 (-) True AMCG00003899
AMCG00003901 mRNA upstream 313139 23847021 ~ 23852940 (-) True AMCG00003901
TU4276 other downstream 4022766 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 4084776 19444016 ~ 19444743 (-) True G3523
TU4265 other downstream 4104153 19424963 ~ 19425366 (-) True G3517
TU3909 other downstream 5377138 18146660 ~ 18152381 (-) True AMCG00003782
TU3879 other downstream 5584577 17942577 ~ 17944942 (-) True G3181
TU5211 other upstream 730025 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 754249 24288131 ~ 24295776 (-) False AMCG00003909
TU5513 other upstream 2364052 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 3331272 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 8775598 32309480 ~ 32309910 (-) True G5502

Expression Profile