RNA id: TU5049


Basic Information

Item Value
RNA id TU5049
length 1621
lncRNA type sense_over
GC content 0.35
exon number 4
gene id AMCG00003896
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23740585 ~ 23757796 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgcctaaaacttttgcacagtactgtacataattacaattttcaagatataaagaaaacaaatccttaATGCCATCAATACCAGCTGAATTTTTATCCTTCTACGGTTTACTCAACTTTTACCTCTACACGCTAGCGTTTGTCTACTCGCCTTCAAAAAATGCACTATATGATTCCCAACTGAAGGACAACCCTGCTTTTTCTATGCTGAATGACTCGGATGATGAAGTCATATATGGgAGTGACTATGAAGAAATGCCTCTCCAAAATGGAAGAGCAATCAAAGCCACGACCAATTTCCAGGACGAGACCGACAGTGACTGAAGAACTGGCTGCAGGAGAGCAGAAGTGACAGGCATGTTTGTTCACATAAAGGTTCAGATTTGGCAACAAGCTAATATGGCCCCAATAtgtgcaaatattaaaatatagtttaagtGTATATGGGATATATTGAAATTGAGAAATCAAGTGCCACTGAATGTAACTTAAAGAAGTTCACAGCCGCACACTGGAGACTGTTGGTGACAGATTTTAAATGGTAACTTGAGTCATAAGATCCAGCTCACTGGAAAGTGAGGTAttcaccaaaaataaatgtaataccctgattttcatttttgttatacttaagttttattttcattttatgtttcagGACAGAACTGAACATGTGTGAATAAAAGGGAgctcttatttaattatttttaaagtaaaatgtatataaactcTAAAATCTGCATTAACTTCAAATATGAAAACACGTGTAAatgtatctttctttctttgctttttatttgaatgtatcaTTTGTTGATTGTGGAGATTTTTATGTGACCTTTCTCATTCCCTTGAGCTTCTCAGTAGAGTGAGCTGCTGGTTGAGTGTAAAGGGGTGTCATGTTTACATACTACTTCACATCATCATTCCAAACGTTTTTGGATCAATTTAGGCTGGTGTTTCATCATAGTTGCCTACCAAAGGTGACTATACATGCTGCTCTACATTAGCACATcataactaattaaaaaaggaagacGAGTGAAAGTTCAGCTTTGTCAAATGTTACGCTGTGGTGAAGTGATGTTTTAAAGTCTGTAACAGAGAAAAATGGGAGTGTATGGGAAAAGCTAGTGTCCTTATAGTAAAGTTTctgtttaagaaaatgtacttttgtgCCTTGCATAtacaactgtatatatttactggATATTGTTTATCTTCACTTGCTTCTAAAGTGGTGCCAATTATCTAATGTACAGATTTATCAAAGTTGAGGATGATGGTAATGTTTGTTGTATGAAAGTGACAGGATAATGGTGGTTTGAATGCTGTAATACTCAATTGTATTCCGAGAGCATGTACCGTACTGTTTAGTTTAGTAACCATGCCGGTTATAATTCTAGGCAGCTGGTAAAAAGTATTCCATTTTGAGATGtggtatttttttcttgtggagAAAAATGTGCTTGACAACATAACATGAGGAAAATATGGCAATTTCTACAGTGCAGCATTGTACCATGAATCAAACAGACAGTTCTGTAATGAATTGCTGTACATATAAATGAGACTGGTGTTGAGGATGTATATTcattaaatacctttttaaaaatgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5017 lncRNA downstream 186061 23554276 ~ 23554524 (-) True G4130
TU4978 lncRNA downstream 317112 23399861 ~ 23423473 (-) False G4101
TU4977 lncRNA downstream 317112 23420998 ~ 23423473 (-) True G4101
TU4887 lncRNA downstream 624900 23045315 ~ 23115685 (-) True G4039
TU4843 lncRNA downstream 884180 22856026 ~ 22856405 (-) True G4000
TU5067 lncRNA upstream 76720 23820690 ~ 23822698 (-) True G4174
TU5141 lncRNA upstream 299698 24043668 ~ 24046142 (-) True G4222
TU5176 lncRNA upstream 380881 24124851 ~ 24125052 (-) True G4255
TU5177 lncRNA upstream 384571 24128541 ~ 24129966 (-) True G4256
TU5304 lncRNA upstream 891320 24635290 ~ 24635495 (-) True G4353
AMCG00003895 mRNA downstream 87030 23642804 ~ 23653555 (-) True AMCG00003895
AMCG00003893 mRNA downstream 206750 23530297 ~ 23533835 (-) False AMCG00003893
AMCG00003886 mRNA downstream 380745 23342244 ~ 23359840 (-) True AMCG00003886
AMCG00003887 mRNA downstream 407026 23322329 ~ 23333559 (-) True AMCG00003887
AMCG00003888 mRNA downstream 421441 23316206 ~ 23319144 (-) True AMCG00003888
AMCG00003900 mRNA upstream 16632 23760602 ~ 23786763 (-) True AMCG00003900
AMCG00003899 mRNA upstream 79807 23823777 ~ 23845018 (-) True AMCG00003899
AMCG00003901 mRNA upstream 103051 23847021 ~ 23852940 (-) True AMCG00003901
AMCG00003906 mRNA upstream 303184 24047154 ~ 24075283 (-) True AMCG00003906
AMCG00003904 mRNA upstream 338695 24082665 ~ 24097083 (-) True AMCG00003904
TU5013 other downstream 206703 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other downstream 206703 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other downstream 206703 23529519 ~ 23533882 (-) False AMCG00003893
TU4276 other downstream 4233832 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 4295842 19444016 ~ 19444743 (-) True G3523
TU5211 other upstream 519937 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 544161 24288131 ~ 24295776 (-) False AMCG00003909
TU5513 other upstream 2153964 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 3121184 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 8565510 32309480 ~ 32309910 (-) True G5502

Expression Profile