RNA id: AMCG00003907


Basic Information

Item Value
RNA id AMCG00003907
length 6131
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00003907
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24145943 ~ 24191342 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGAGAAGGAAAAGAAGAGTGTTGTGGTTTTGGCCATGGGAGCATCGACGTCTGCAGAGCGCACAGAGCAGAGTGCGGAGGACGCGGGCGCCCAGGAGCACACCGCCGGGCTGGACGCGCCTCAGGGAGGACAGGATGCTGCCGGCAAGGCAGCAGACACTTTCACTGCAGTACCGTCTCCCACTGGACCTGAGATCGACACACGCCAGAAACGTAGCTTCCACACTGGCATCACTGAGGGGGAGATCGATAAGAATGGACAGATTTCTAGCCTGAATGGAAAGGCTGAAGACCAGGTCGTGGAATTTAATGGGCAGAAGGAGCAGCTCAATGGCCAGGCTGAGGAGACGATCCCCGATGAAGtcaaaaaagacaaaaatgaaaagactgAGCCAGTGCAACTTCTGACTGTGAAGAAAGAGGATGGTGAAGCGGGCAGTTCTGAGGTTGCCGAGGATACGAAGGGAGATGCCAAGGTGGATGAAGCTACACCAACAGAGGAGACAAAAGTTCCTGAAGAGCAGGTTGTTTCTGAAACAGCTGCTGACCCGGTGGCTGcagagctcccttcagaaaaaGTAAATGGCGATGCTACTGAAAAGGAAGCTGAAACAAAAGAACCAACTGAGGAAGAAAAAACTGAGAAAGAGCCAGAGAAACCAGCTGAGTCTCCAACCAGTCCTTCGCTCCAAGAGACTCAGTCCCCTCTGAAGAGGTTTTTCACACAGGGAATCTTCTCTAGTTTGAGAAAGAAGACCAGTTTTAAAAAGCCTAAGGAGGAAGAGCCTGCTGCCGAAGAGAAGACTGAAGTTGTGGCtgaggaagaaaaggaagaaacagaagaaaatacagaagCTCCTGCAGAGGAGGGTGAGAAGAAATCTGAGGAGGTGAGCCCTGAACCTCAGCAGGAAGAACCCCCCACACAGGAAGAAGTCAAAGCAGAACTCACGCTAGAGACAGTACCACTCATTGTGGTAGAACAAAAGGAGGATGAGATAAAAGTTGAAATTAAGATTGCCGCTGAAGAAGCTTGCAAGGTCGATGAAAAGCTGGAAGATCTACAGAACAATGTTCCAGGAGAAGCAGATGAGGTAAAAAATGAAGTTGAAAGTGCATGTGTAGAAACTCAGGAAGTTACAAAACCTGAAGTCCAGGAAGGGGAATCTACTACTGAGACCCAACCTATAGAAGAAACAGTGCAAGATACTATTGAAGGCCAACCTAAGTCAGAGCAGCCAAGTCCTGATGAGGTTTCCAGTGCTAAAATGCCAGAGGGAATCACCACTGAGGCTGAAATTCTGTCCTCCCAAGAAAAGGCTAAACTGCAGGGAAGCCCTCTTAAAAAGCTCTTTACAGGGACTGGCCTAAAGAAACTCTCtggaaagaaacacaaaggCAAGAAAGAAGATGAGGCAAAACTGACTGAATCTGGTGAAACTGGGACTGAACAGATCCAGTCATCTGCTGAATCTGGAGAGGGGCAGAAAGGAGAAAGCTCTGCTTCTTCTCCTGAAGAGTCGGGTGAACATGCTGTTGCTGAGGCTGCTCAGGGAGAAACCTCTGGGCCTGAAAATGAAGGGGATGGAGTTACCtctgatggagagagaaagagggatggCATTACACCCTGGGCTTCCTTCAAAAAGCTTGTGACTCCAAAGAAACGTGTCAAAAGGCCTTCAGAGAGTGACAAAGAAGATGAACCGACTGAAAAACCTAAAAGCGCAACCATGTCTTCAACTGAGAGTTCTGCATCTGCTGAGAAGCAAGAAGAGCCAAAGCCCACTGAAGAGGAACAGAAACTTGAACGCAGTACCGAAGAGCCAAAAAAGAAAGTCGATACATCTGTGTCCTGGGAAGCACTGATTTGCGTGGGTTCATCTAAAAAGAGAGCTCGAAAAACATCAGACTCTGACGACGAGGCCCCCAAGATAGAGGAGGAAGTTCAGAAATCGGGAGAGGAGTCTGCAAAAACTAAGGAAGAATCTGCAGAATCTCCTACTACAAGCTCTCAAGAGGCAGACCATGAACAATTAGCTTCCTCCCCAGACCAGGCTGGTAGCCCGTCAGATGGTGAAGGGGTGTCTACTTGGGAATCCTTTAAAAGGCTTGTCACCCCACGAAGGAGGGCCAAGGTAGATGACAAGCCTGAGGAATCTGCTGCTGGTACCACTGCTGAACAAATACCCTCTGACAGTGAAATGGGAAAAGAGGAGTCTTCATTTTCTCTAAAGAAACTAATTCCAGGACGCAAAAAGAAGAAATCAGATGCAAAACAAGAGCATGCTGTAGCTGATGAAGCAGACAAAGAGGCTAGATCAGCTGAAGAAGACTCTGATACACCAGCTGTGGTCCCCCTGTCAGAGTATGATGTGGCAGAACCAGAGCAGGTTGAAGTTCTGGTGAAGGAGACAGTTGCAGCTGAAGTGAAGCAAGTGCAACCAGACAAGACAAACCCAGAGGAGATCAAGCCAGCAATGACCATCCCTGAGGCAGGAGATGTATCTGAAGCTGATAAGCCTAGTGTTACATTCCCCGTGGCAGAACAAGTTCAAGAAATTGAAATTTCTGTGGAGAAAGCTGCAGGAGATATTGAAGAACGATCTCCGTCCTGGATATCTGCAAGAGTGACGGAAGGAGTAGCTGAGGAGGAAACGGAAGTCATAAGCAAACATCAACAACTCAGTGATATACCTGAAGAAGTGGTAGTGGAAGAGACAATTATTATAACCAAAGCTGCTGCTCAGGTGACAGAGCAGGTCTCCCAAGACGACACAATAGCCGAAGACATGGTGGAGCTTACATCCGAGGCAGTGACTGCTCTGGAGCAAGCACCCGAAGAGTCATTTGCCGAGGAGACAACTGAAATGGTGTCAGCCGTTTCCAGACTATCGGGATCCCCAGGAACATCTGGCGAGACCACACCTGTACCTGGAGAATATGAGGTAAAACAGACGGATAAAATACTCCAAGAAGTTGCAGCAAATGTGAAATTGACTCCGATTTCCCTCTCTGTAATTAAGACTGCTGAACATCTGGAAGAGGCTGTTGTTGTTACCACTCCACAGTTAGTGGGGACAGCAGCAAAAGAAGAATTGGCAGCAGAGGTTCTACATAAAGAAGCAGAAGCGGTAGCTATATGCACAGACCTGGCCTCTGAAGAAATAGAGGCAGTTGAGAAAAGTGTTACAAAAAGCACAATTGAAGTCATCACTGTGGTAATGGAGGCCCTGTCCACAGAAGTTGTAgctgaagaaaaggaagagcCATCTCAAGAGGTTGGGGTTCTAGAGGAAAAGATTTATGATGCGCACGTTGAGGAAATCAAAACTGAATTTCAGGAAGCAGTAGAGGAAgagaaaacactgaaagagaTGGAATCTCCAAAAAGTGACACAGCAGAAAAGGTTAGTGAATCATTCAAGTTGCCAGTAGAAGCCAAGAAAGATACAGAATCTGAGGAAGGCAATTCTGAAACAGAGCCCCCCAAAGacacaacaaaagaaaaggaagaaaaaccaGTTCAAGAACCAGAGGCAATTCGGAACATTGCAGTCAATGGGCTACAAGATGAACTTCCTGAGGAACAAGAGGTGGAAGAACTCACACCAAAGGATGAAACTGAAGACCCATTATCATCAAAGGTAGAGGAGCTGACTAGCACTCTGGCAATTGAGGTAACTGAAATGTCAGTTATAGAAGAAAAGCTACAAGAACATGCAAATGTTGAGGAACTTGCTGATGTTTGCCAAGCCCcagtgaaagaaaacattgtatCAGCCACACAGGAAGTAACAGCCTCATTACCAGAAGTGCCCACAGCTGAGAGCTTAGAGACTAAGGAAGCTCCATTGGCTGTATCAGCTTCTGCTGTAGATGCTCCAGTGCTTAAGGAAACTGTCAGTGTTATTAAACCCCCATCAGAAACTGTTAAGTCTGATGTTGCTGAGATCAAAACAGAAGATGCTGTTTTACAGGAAAGAGTTTGTGCAGTACAATTTGCTGATCAGCAGAAAAGCACCACAACAGTGGACGAGACAGTAGCGGCACTTGTTGAAGCAGCAAATAGAGACGCATTGATGGAAACTGCAGCTCTTAGTGTTCCTGACAAATCTTGTATTGAGGTTGTGGATGAAGTATGTGAGGAACAAGTCGAAGCAAGCGATGTAAAACATGAGCAAGTGGAAGTAAACGAAAATGTGATTGAATCAGCTGCTATTGAAAAGCAGAGCACAATGATTGTCCAGGAGATTATCCAAAATGTTGTTGAGAACTTTACAGGGAGAGTAAGTGCAACTGAAAGTAAAGTTGATGCTGATGAAGCACATGAAGTAAAAGAACTTATTACTCCAGAAGAGTCATCATCTACAAGTGACATCACAGAAGTGGAAAAAGTCGTGGAACCACAGATTGTTGAGAAAAGCAGAGCTGTGGAATGTGTGGAAGAAGTTCAGGCCATTCCCACAACACAAGCAGAAGCTGAAAAAGTACAAGATGACAAAGACTCTCTGGTGGAACCAGAAACTGACCTTGCTTCTGAGACATCTAAGGATACTAATGTTAAGGAAGACTCAAAGGCACCTGTAGAACAGCAAGCAGAATTAACTGCACAGGCACTGCCTGAGCATCCTGTGGAAAAAGAAATAGAAGCAGTgcagcaaacagaaataatggagaaaacacaagaacagacagaaaatatagAGAAGGAGACAGTAGAGGATGCACAAGTACCAGCTTCAAGTGAGACAGGAGATCTGACAGCAGCTGATGTCGAACCAGTCAAAGACATTGAGGTAGAAAGTGTGCCTCTTGCAAAAGAAAAGAGTGAGGATATAACTGAGGAAATAGTTTCTGAGGAGGTTGAGGAGACAAAGGCTCAGGAGACAGTGGTGAAAAgcaaagaagaggaagaagagagcAAGGAAGTTGAGGAAGTGATTATCCAAGAAGTGGTGGAGAAGGTAGAGAGTTCTGAAGTGGTTGTCCAGGAAGAAGGAGTGAAAGATGATAAGACAGAAGATACTGCAGAACGTGAAACAGTTCAGAAAGTTGATGCTGAAGAAAAAAGTACAGAAGAAAAAGTTGACACAGTGgaagaaaagacagagaaagcagATGCTGAGACAGTACCAAAACAAGATGTTGAGATCAAGACAGACAGTGCAGAGATTTCACAAAGTGGTAGTGAAGTAAAGGAAATGGCAAAAAGCCAGAAAGAAATCTCAGAAGATGGAAAAAGACAGCCACAAGTAGCAGAAGAGATAAAAGAAACATCTGCTGAAGTTACCCAAAGCCAAATACCAGTGGTTGAAGAATCACAGAGCCAAACAGAAATTAAGGAAGATGCCCCAAAAGAAGAAGAGATTCCTCATGTAAAGAGTGAGAGCAAGGTCGTGGAAGAGATACAAAAGGAGACATTGTCTGCTGATGACCAAATAGACGAAATAGCTTTACAAAGTCCAGTAGGGGCTAGTGAAGTCCTAGCAGGCCTGGAAGAAGACAAAAAAGATAAACAGAGCCAAGAGAATGTGATTGAAGAGGCAGAGATTCCAGTGTCTGTGATAGATTCTCAAAGCCAAATACAGCTTGCAGAAAGTGAACAAATCCACAGAGatgaaaagaaagacacagcCAGCCAAGATCAAGGCATTGAAGAACCGTGCCTGAAACAAGTCTGCGAAGAGGTGCAAACTGAGACCACTGTGGCATCTGATGATAAACCTGACAAAGTACCAACAGAAGATAAAGTTGACCGAATTCAAAAAGTCTTGGTAGAAGATGAAAGTCAGGAGATTGCTGTGGAAGATAGCCCGAGTCAGAAGCTCACTGCAGAAGACGTTCAAACTGAATCTGAGGTGAAGGAGGTCACAGAAAGACCGGTGATACCCGCAGAAGAGGAGAGTCAGACAGCAGCTGCAGCTGATGGGGAAAACCAGACAAAGACCAAGGAAGATGTGAAAGATCAGACGGTAGCTTCAGAACCAGCACAGAATGCAGCACCTGCAGTAGAAGACGCACCGAGCAAGGATTCGGTGGCAGCCAATGAGGAGATGGAGACCAAGCAAGAAGAGCCAATAGTTGAGCTGAAAAAAGAAGTAACCCAAGAAACAAAGGATGCCGAAGAA

Function

GO:

id name namespace
GO:0032060 bleb assembly biological_process
GO:0000902 cell morphogenesis biological_process
GO:0035024 negative regulation of Rho protein signal transduction biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component

KEGG:

id description
K16528 AKAP12; A-kinase anchor protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5177 lncRNA downstream 15977 24128541 ~ 24129966 (-) True G4256
TU5176 lncRNA downstream 20891 24124851 ~ 24125052 (-) True G4255
TU5141 lncRNA downstream 99801 24043668 ~ 24046142 (-) True G4222
TU5067 lncRNA downstream 323245 23820690 ~ 23822698 (-) True G4174
TU5051 lncRNA downstream 401973 23740585 ~ 23743970 (-) False AMCG00003896
TU5304 lncRNA upstream 443948 24635290 ~ 24635495 (-) True G4353
TU5352 lncRNA upstream 629499 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA upstream 677369 24868711 ~ 24873886 (-) True G4397
TU5390 lncRNA upstream 872212 25063554 ~ 25068242 (-) True G4415
TU5435 lncRNA upstream 1274910 25466252 ~ 25467433 (-) True G4455
AMCG00003905 mRNA downstream 42822 24099012 ~ 24103121 (-) True AMCG00003905
AMCG00003904 mRNA downstream 48860 24082665 ~ 24097083 (-) True AMCG00003904
AMCG00003906 mRNA downstream 70660 24047154 ~ 24075283 (-) True AMCG00003906
AMCG00003901 mRNA downstream 293003 23847021 ~ 23852940 (-) True AMCG00003901
AMCG00003899 mRNA downstream 300925 23823777 ~ 23845018 (-) True AMCG00003899
AMCG00003908 mRNA upstream 32043 24223385 ~ 24278980 (-) True AMCG00003908
AMCG00003909 mRNA upstream 96791 24288133 ~ 24296246 (-) True AMCG00003909
AMCG00003916 mRNA upstream 465135 24656477 ~ 24683766 (-) True AMCG00003916
AMCG00003919 mRNA upstream 495871 24687213 ~ 24695742 (-) True AMCG00003919
AMCG00003921 mRNA upstream 505729 24697071 ~ 24708960 (-) True AMCG00003921
TU5013 other downstream 612061 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other downstream 612061 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other downstream 612061 23529519 ~ 23533882 (-) False AMCG00003893
TU4276 other downstream 4639190 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 4701200 19444016 ~ 19444743 (-) True G3523
TU5211 other upstream 72565 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other upstream 96789 24288131 ~ 24295776 (-) False AMCG00003909
TU5513 other upstream 1706592 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 2673812 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 8118138 32309480 ~ 32309910 (-) True G5502

Expression Profile