RNA id: AMCG00003908


Basic Information

Item Value
RNA id AMCG00003908
length 1725
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00003908
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24223385 ~ 24278980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTACACAGTCATCAGATGCCCCCTCATGTCCATGGAGGATGTGCTGAAGATAACTCCCACCCCTCTTGGTGAAGGGAAGAGCACGGTGACTATCGGCCTGGTCCAGGCACTCACTGCCCATCTCAAGTCCAACTCCTTTGCGTGCTTGAGGCAGCCTTCACAAGGACCCACCTTTGGTGTTAAAGACTATCAGCAGTTCATAATTCTGCAGGGCTGGGGTTTGGCCATGCTGGGAAAGAGTGTGTtcccatgtgtgtctgtgtgcactgTGGAGCTGGGGTGCAGGGGGGGAGCGGCGGGAGGTGGATACGCTCAAGTCATCCCAATGGAGGAATTCAATCTTCACTTGACTGGAGATATTCATGCTATCACTGCAGCCAACAACCTCCTAGCAGCAGCCATCGATGCCAGGATGTTTCATGAAGCCTCCCAGACAGACAAGGCCTTGTACAACAGACTTGTGCCATCTGTCAATGGAGTCCGAATGTTCTCCTCTATTCAGGTTGCCAGGCTACAACGTCTGGGCATTAACAAGACTGACCCCAGCACACTGACTCCAGAGGAGATAAACTTGTTTGTGCGCCTGGACATTGACCCGTCAACAATCTCATGGCAGAGAGCAAGTGAGATTATGGCAATCCTGGCCTTGACAGATGGGTTGGCAGATATGAAGGACAGACTTGGTCGGATGGTGGTCGGCAGTGACAAGAAAGGGCAGCCGGTGACTGCAGATGACTTGGGTGTAACTGGAGCTTTAGCTGTTCTGATGAAAGACGCCATCAAACCAACGCTAATGCAGACTCTGGAGGGCACGCCGGTCTTCGTGCATGCGGGCCCGTTTGCAAACATCGCACACGGCAACTCATCCGTTCTGGCAGACAAGATTGCGCTGAAGGTGGTTGGTGAAGGAGGATTTGTAGTGACAGAAGCTGGCTTTGGTGCTGACATTGGGATGGAAAAGTTTTTCAACATCAAATGTCGAGCATCTGGCCTGCGTCCAAATGTCGTTGTTTTGGTTGCCACAGTGAGGGCCTTAAAAATGCACGGTGGAGGTCCCAATGTCACTGCAGGTGCACCTTTGTCTAAAGAATACACGGAGGAGCATCCTTTCTGTGCTTCTCATTACCAGAACCTCACTTTGGTTGAAGATGGCTGCAGCAATCTAAAGAAACAGATCCAGATTGCCCACCTCTTCGGGGTTCCTGTGGTTGTAGCATTGAACGTGTTCAAAACGGACTCCACAGCAGAGATTGACCTGGTGTGTCGGATCGCCAAAGACTCTGGGGCTTTTGATGCTGTGCCGTGTCACCATTGGTCAAGAGGAGGCAGGGGCTCCATAGAGCTGGCCAAGGCAGTGAAAGAAGCAGCCAATCAGCAAATTAACTTTGAATTTACTTATGACCTACAGATGCCCATTGTGGAAAAGATACGAACGATTGCACAGAGAGTCTATGGGGCCAAGGATATTGAACTGTCACCAGAGGCTCAAGCTAAAATAGATTGTTACAATAAACAGGGTTTCGGAGCCCTTCCCATCTGCATGGCCAAGACTcacctgtctctgtctcaccAGCCGGACAAGAAGGGCGTTCCCTCAGGATTCATTCTGCCCATTCGCGATGTGCGTGCCAGCATTGGGGCTGGGTTCATCTACCCTCTGGTTGGGACGGTGAGTGAAAATCTTGAGCAATGGAGCTTTCCGTTTGCATCAACGGGTTAA

Function

GO:

id name namespace
GO:0009396 folic acid-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5177 lncRNA downstream 93419 24128541 ~ 24129966 (-) True G4256
TU5176 lncRNA downstream 98333 24124851 ~ 24125052 (-) True G4255
TU5141 lncRNA downstream 177243 24043668 ~ 24046142 (-) True G4222
TU5067 lncRNA downstream 400687 23820690 ~ 23822698 (-) True G4174
TU5050 lncRNA downstream 479415 23742088 ~ 23743970 (-) False AMCG00003896
TU5304 lncRNA upstream 356310 24635290 ~ 24635495 (-) True G4353
TU5352 lncRNA upstream 541861 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA upstream 589731 24868711 ~ 24873886 (-) True G4397
TU5390 lncRNA upstream 784574 25063554 ~ 25068242 (-) True G4415
TU5435 lncRNA upstream 1187272 25466252 ~ 25467433 (-) True G4455
AMCG00003907 mRNA downstream 32043 24145943 ~ 24191342 (-) True AMCG00003907
AMCG00003905 mRNA downstream 120264 24099012 ~ 24103121 (-) True AMCG00003905
AMCG00003904 mRNA downstream 126302 24082665 ~ 24097083 (-) True AMCG00003904
AMCG00003906 mRNA downstream 148102 24047154 ~ 24075283 (-) True AMCG00003906
AMCG00003901 mRNA downstream 370445 23847021 ~ 23852940 (-) True AMCG00003901
AMCG00003909 mRNA upstream 9153 24288133 ~ 24296246 (-) True AMCG00003909
AMCG00003916 mRNA upstream 377497 24656477 ~ 24683766 (-) True AMCG00003916
AMCG00003919 mRNA upstream 408233 24687213 ~ 24695742 (-) True AMCG00003919
AMCG00003921 mRNA upstream 418091 24697071 ~ 24708960 (-) True AMCG00003921
AMCG00003920 mRNA upstream 434249 24713229 ~ 24744190 (-) True AMCG00003920
TU5013 other downstream 689503 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other downstream 689503 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other downstream 689503 23529519 ~ 23533882 (-) False AMCG00003893
TU4276 other downstream 4716632 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 4778642 19444016 ~ 19444743 (-) True G3523
TU5210 other upstream 9151 24288131 ~ 24295776 (-) False AMCG00003909
TU5513 other upstream 1618954 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 2586174 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 8030500 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 8128822 32407802 ~ 32426563 (-) True G5540

Expression Profile