RNA id: TU5211


Basic Information

Item Value
RNA id TU5211
length 837
RNA type TUCP
GC content 0.51
exon number 8
gene id AMCG00003909
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24263907 ~ 24296246 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCACCGCACCGCCGCCGCCGCTCCATCACTCTCCCGGACCATGAGGCTGTCCGCAGTGCTGCGCAGTGCGAGCCGGAGCTTCCCCTCCGCCGCGGTGAGCCGGCCCCGGTTCGGGCTGCGGGCCCTGCGGTCTGAGGGCGGCTCTGCGGGGCCGGGCGGCTGCAGTGTGCGAGAGGCCAGCTCGGGCAGCGGGACCGGAGCAGCGGGGCCGGCGATGCTGTTCGGGAAACGCCGGGACCACAATGGCAGCCCCGGGCATGAGGCTGCCTTCAGGGAAATAATCCAGAAGTCCAAAGAAGAGATAACATCATTACAGAAGCACCACCCTTCGTTCAAGCCTGTCCTTGCCATCATAGAGGCAGGTGAAGATGACAGTTTACTTGAAATGAACAAGGACATTGCTGCTAAGATTGGATTAAATGTCATTCATATCTGCTTGCCAGTGGAGTGCACTGAAGATGAGATTATAGATGAAATCCTTAAGCTGAATGAAGACCCTAAGGTCCATGGCTTAGTTCTGCATCTGCCGCCAGCTTCTCATTACAGCAAAGTACTGAACACCGTGAAACTGGAGAAGGATGTCGATGGGGTGACAGATCTGAACGTGGGAAGGCTTGTCCGTGGGAATGTGAATGAGTGCTTTGTTCCTCCTGTAGCCAGTGCAGTAATTGAACTACTTGGAAGACATGAGGCATCGCTGGAAGGAAAGACTGTGCTGATAGTGGGGGAGAGTGGGCCGCTTGAGGTTGCCCTGCAGTGTCTGATTCAGAGGAAGGGTGGAGTGGTGCTGAGTCCTGGGTGGAAAGCTGACATCCCACAGAAACAGctccagcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5177 lncRNA downstream 133941 24128541 ~ 24129966 (-) True G4256
TU5176 lncRNA downstream 138855 24124851 ~ 24125052 (-) True G4255
TU5141 lncRNA downstream 217765 24043668 ~ 24046142 (-) True G4222
TU5067 lncRNA downstream 441209 23820690 ~ 23822698 (-) True G4174
TU5049 lncRNA downstream 519937 23740585 ~ 23743970 (-) True AMCG00003896
TU5304 lncRNA upstream 339514 24635290 ~ 24635495 (-) True G4353
TU5352 lncRNA upstream 525065 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA upstream 572935 24868711 ~ 24873886 (-) True G4397
TU5390 lncRNA upstream 767778 25063554 ~ 25068242 (-) True G4415
TU5435 lncRNA upstream 1170476 25466252 ~ 25467433 (-) True G4455
AMCG00003907 mRNA downstream 72565 24145943 ~ 24191342 (-) True AMCG00003907
AMCG00003905 mRNA downstream 160786 24099012 ~ 24103121 (-) True AMCG00003905
AMCG00003904 mRNA downstream 166824 24082665 ~ 24097083 (-) True AMCG00003904
AMCG00003906 mRNA downstream 188624 24047154 ~ 24075283 (-) True AMCG00003906
AMCG00003901 mRNA downstream 410967 23847021 ~ 23852940 (-) True AMCG00003901
AMCG00003916 mRNA upstream 360701 24656477 ~ 24683766 (-) True AMCG00003916
AMCG00003919 mRNA upstream 391437 24687213 ~ 24695742 (-) True AMCG00003919
AMCG00003921 mRNA upstream 401295 24697071 ~ 24708960 (-) True AMCG00003921
AMCG00003920 mRNA upstream 417453 24713229 ~ 24744190 (-) True AMCG00003920
AMCG00003927 mRNA upstream 1257762 25553538 ~ 25558348 (-) True AMCG00003927
TU5013 other downstream 730025 23529519 ~ 23533882 (-) False AMCG00003893
TU5014 other downstream 730025 23529519 ~ 23533882 (-) True AMCG00003893
TU5015 other downstream 730025 23529519 ~ 23533882 (-) False AMCG00003893
TU4276 other downstream 4757154 19444016 ~ 19506753 (-) False G3523
TU4274 other downstream 4819164 19444016 ~ 19444743 (-) True G3523
TU5513 other upstream 1602158 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 2569378 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 8013704 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 8112026 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 8297851 32593627 ~ 32596407 (-) True G5566

Expression Profile