RNA id: AMCG00003919


Basic Information

Item Value
RNA id AMCG00003919
length 3526
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00003919
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24687213 ~ 24695742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGACGTGCTGACGTCATAGACTGGCGTCCCAGCCAGACAAGAACAGATACcgacagagggggagagagagagagagagaaaactgtgagattgaaaaaaaacccaacaaaaaaaagcaaaataaaagacagaaagacGTTAGTTGTGTGAACTTTTGGACAAGACGACccgaaaagaagaagaaaactaaagCTGACGGGGACAAAGAGGGAAGAGTGGATGGACGGCGTCGGGTTGGTGACTCCCAAAATGGAGGAGCAGCACACGCACTGCATGAACTGTGTTAGCCGGAGGTGTATGGCCCGGCCAGAGACTGGCGTTTCCTGCGACCTAATTGGCTGCCCTTTGGTCTGCGGTGCGGTTTTCCATTCATGTAAAGCAGAAGAGCATCGTCTGCTGTGCCCACTTGAGAGAGTGCCTTGTTTGAACAGTGGCTTTGGATGTCCCTTTACAGTTGCTCGCAACAAAATAGCCGAACACCTTGAAATATGCCCAGCCAGTGTGGTGTGTTGCACTATGGAATGGAATCGGTGGCCAGTAAGCTATGCTGATAGGAAGTCATATGAAAACCTAAGCAAGGATGTTGATGAAGTAGAGCAACTTGATATGGCTTTAGCACTGCAGGATCAGAGAATGCTGCTAGAATCTCTTAAGGTTGCTACCATGGTATCAAAAAATGTTGATAAACCACCTGGTGCTAGTGAGAAGATGCCTGTGGCTTTGAGCATACCAGAAGAAAAACCCACAAATGGAATTATTGCTATGGATGAGGAGTCTTATAATGAACTTTACAGAGCTACAGTAGAAACGACAAGAAGCTTAGCTGCAGCTTTGGACATCCTCAGTAATGCAACCCGAGATATGGACTTAATTAATGGAAGTCTTCCTGAAGAAAAGCCTGAAAGGAATGGGGATGTGTGTGTCGTGGAGGAGGCGTTAGACCTGCAGAATGTAGAGATGAAAGAACATGACGAGGAGTCTGACTGTGAGCTCGGAGCGGTGGGTGGAATGGATCATGATTGTATAGCAGAAAGTGGGAGTGACAGGAAGATGTGGTCAGAGCCAAATGGATTTGAGTTTttagaagaagaaggagaagaagatgTGGAAACTGAAGGACTTATGAACATGGTAAAAAAGATTAAAGATGAGAAACCCCTTTGTAATGGTTTTCACAGTGCACAGTGTAGCCAGGCTAATTTGGGGCAAGACAAAATGGATTTAGATGCTGCTGAATCTAAACACTCTGTCATCAATGGGTCTTGGCTGGTTGGCAAGCCTGAACACAGGCCTTTGATGCCTTATCGTTCCATACCGGTTGTAGCACAGGAGCCCTCTGGTTCccagccaccaccaccaccgccacCACTACCATTTCCGCtaccactcccactcccacttcCTGAAATCCTGCAGAATAATGCACTCCAGCACTTGCCCATTGACTTTGAGGACAAAAGGTTTGAGCGCAAGTTACAGAATCTCCAGATTCTCAGAGGTATGAGTGTGTTCACGTTTAACGGACGCAGAACTTTGTTTACTGACCCATATTTGTTTCGCACAAAAATGGAAGATAAAGCTGTTGACACATCTGACCTAGAAGTGGCGGAAGATCCGATGGGTCTTCACGGCATTGACCTCATCACAGCTGCCTTACTCTTCTGTCTGGGAGACTCGCCCGGCGGCCGCGGAATTTCCGACAGTAGATTTGTCGATGGTTATCGTATTGACTTTGGTACGCAGACCTTTTCGTTTCCCTCAGCCATTTTGGCGACAAACACCATGGTGGGTGAAATCGCTTCAGCCTCTGCATGCGATCACGCAAACCCACAACTTTCCAACCCCACTCCCTTCCAGACTCTCAGGCTGGACCTGGTTCTGGAATGTGTGGCTAGATACCAAACCAAGCAACGCTCCATGTTTACTTTTGTCTGTGGACAGTTGTTCAGGAGGGATgaattttcttctcattttaaaaatgttcacgGGGACATTCATGCTGGCCTGAATGGGTGGATGGAACACAGGTGTCCTCTGGCTTACTATGGCTGCACCTACTCCCAGAGAAGGTTCTGCCCCTCTGTCCAAGGTTCCAGAATTATCCATGACCGCCATCTTAGGTCGTTTGGAGTCCAGCCTAGTGTTCCAACACCATTGACTGAACTGAATCCGAGCAACACAAGCTCATTTGGGCCTCGTTTTGACCATTTGAGTAATCTTCCTTTCGAGGTCCTGCAGCACATTGCTGGGTTTCTTGATGGGTTCAGTCTGTGCCAGCTGTCGAGAGCATCGCGGATGATGAGGGACGTATGTGCCAGCTTGCTGCAGGTCCGTGGAATGGTCATCCTTCTGTGGGAAAAGCAGCATTATCCAAGTGGACCCCCATCATGGCAGATAAAAGACAAGGTGTGGAGATTCAGCACAGCGTTTGGCACTGTGCACGAGTGGAAGTTTGCCAACATTGCTAGCATGGCCGACCATCTGAAAAAGTGCAGATTCAATACTGTGGATCGGCGAGAAGAAGCAATCCCATTGCcgtgcatgtgtgtgacaaGGGAGCTCACTAAAGAAGGACGGTCTCTGCGATCAGTTCTGAAGCCAGTATCATGAAAACTCAGATCCTCTACTTTATTTCTTCCAGTCTGATTAAAGAGCTAAAACACTCAAACGTAACCTCTTTGTAATATGATACTTTATCAATGTACTGCAGATTacttatacataaaaaataatctatcactgtgtatataaacaatgttttgatgttaaaattattttttatataaaagtgagtactgtgctgtattaaaGTTGAAAAGAGGAGCCTTAATGTATGAAATAACACTTGACTTGCTGGACACGATAAGTTTCTTTTGATCTTTATCATTAATTTTCCCTGCGGGACTCTGATATctgtatattgttatattatctTGCATGGTTTGATATTTAATGAGTGCCCTTCATCTGggtaatttacaaatattaagaATATGCACACTTTAGCAAGATACTCAAGGATTTTATTTAGAAACTGACCAAACAGCAAATGTGTATAAATCACTCTTCTCTGTATCTGAAATGCTGGGCACTGTATAATCATTTCTACCAGCCATATCCCACCTTCTCCCATACAGTTGAATCTTGACACTTCAAGGGTTTAGGACAGCATTTAAGgcttaaagaaaacaatcctCTGATGGCCTAAATACAGGTAGGGTGTGAAGTCATGCACCTTACGTTCTTGCTCATAATTTGTTGCATGGGGAAAGCTTGCAGGATATTTTCACGGTTCATTACAATGTTGAATTATGCAGATGTTATATCATTTGTTTTGGATTTCCAGACTGTGCACATTATCTTATTGtaataactaatttaaaacaaacaaaaacaaaaaaatactgtagTATAAAGATCACAATAGCACTTTATTGTTGAAGTGTAATTTTaagtttacttttaattttgtagtGCACCTCTAATATTTTTTGACACAGAAGAAAgaagttttttaaaataacc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10307 FBXO30; F-box protein 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5304 lncRNA downstream 51718 24635290 ~ 24635495 (-) True G4353
TU5177 lncRNA downstream 557247 24128541 ~ 24129966 (-) True G4256
TU5176 lncRNA downstream 562161 24124851 ~ 24125052 (-) True G4255
TU5141 lncRNA downstream 641071 24043668 ~ 24046142 (-) True G4222
TU5067 lncRNA downstream 864515 23820690 ~ 23822698 (-) True G4174
TU5352 lncRNA upstream 125099 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA upstream 172969 24868711 ~ 24873886 (-) True G4397
TU5390 lncRNA upstream 367812 25063554 ~ 25068242 (-) True G4415
TU5435 lncRNA upstream 770510 25466252 ~ 25467433 (-) True G4455
TU5572 lncRNA upstream 1301693 25997435 ~ 25998628 (-) False AMCG00003946
AMCG00003916 mRNA downstream 3447 24656477 ~ 24683766 (-) True AMCG00003916
AMCG00003909 mRNA downstream 390967 24288133 ~ 24296246 (-) True AMCG00003909
AMCG00003908 mRNA downstream 408233 24223385 ~ 24278980 (-) True AMCG00003908
AMCG00003907 mRNA downstream 495871 24145943 ~ 24191342 (-) True AMCG00003907
AMCG00003905 mRNA downstream 584092 24099012 ~ 24103121 (-) True AMCG00003905
AMCG00003921 mRNA upstream 1329 24697071 ~ 24708960 (-) True AMCG00003921
AMCG00003920 mRNA upstream 17487 24713229 ~ 24744190 (-) True AMCG00003920
AMCG00003927 mRNA upstream 857796 25553538 ~ 25558348 (-) True AMCG00003927
AMCG00003928 mRNA upstream 885029 25580771 ~ 25591487 (-) True AMCG00003928
AMCG00003929 mRNA upstream 964588 25660330 ~ 25696539 (-) True AMCG00003929
TU5211 other downstream 391437 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 391437 24288131 ~ 24295776 (-) False AMCG00003909
TU5013 other downstream 1153331 23529519 ~ 23533882 (-) False AMCG00003893
TU5513 other upstream 1202192 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 2169412 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 7613738 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 7712060 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 7897885 32593627 ~ 32596407 (-) True G5566

Expression Profile