RNA id: AMCG00003927


Basic Information

Item Value
RNA id AMCG00003927
length 1011
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00003927
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25553538 ~ 25558348 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCGCGTCAGAATCATTGTGGTGGGGGCTGGAGTCGTAGGCCTCTCGACGGCAGTGTGCATCGCGGAGTCCATTCCACACTGCTCTGTGACCGTCCTGGCTGAGAAGTGTTCCCCTGACACTACCAGCGACGTAGCTGCAGGGATGCTCCATGCTCCTCTATTCCCAGATATTCCAGTGGATCGGCAAAAGCGCTGGTTTAAGAATACGTTCGATCATCTGTTGGCTATTTCTGAATCCTCAGAGGCTGCAGATGCGGGTGTGTTCTTGGTATTCGGATGGGAGATTTTTCGGGAGGTGCCCAGAGAGAAAAGGCCTTTCTGGTCACAAGATGTCCTGGGATTTCGTTTCATGACAGATGCTGAGCTAAAGAAGTTCCCACAGCACAAATTTGGACACGCCTTTACCACCATTAAGTGCGAGTGCCTTACCTATCTGCCTTGGCTTGAGAAAAGAAAAGCTGGTGGGCAGATTCAGCTTGGGAGGGTGACAGACTTCGGGCAGCTCTGCCAGGGCTATGACATCATCGTCAACTGCTCCGGCCTGGGATCCACGGCCCTGGCAGGCGACCGGCAGCTCCACCCGGTGCGGGGGCAGATCCTGAAGGTCTACGCACCCTGGCTGAAACACTTCATCAGGGATGGCGACGGACTCACCTATATCTACCCTGGGGCCAAGAGTGTCACGCTCGGGGGCACGCGGCAGGCCGGTGATTGGCGGTTGATGGCAGACGGCGAGGAGAGGGTGGAAATATTTGAGCGCTGCTGCAGGCTGGAGCCCTCCCTGCAGAAGAGCCTGCAGCTGGGTGATGCAGTAGGCTTGAGACCCGGCAGGAGGAACTTGAGGCTGGAGAGGGAGATGTACCAGTTCAGAAATCGGCAGGTGCCCATCGTCCACAATTACGGCCACGGGGGGGGAGGCATCTCCCTGAGCTGGGGGACGGCCCTGGAAACGCTGCAGCTGGTGCAGCAGTGCGTGAGTGACCGGCCTCTACCATCCAGATTGTGA

Function

GO:

id name namespace
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG:

id description
K00272 DDO; D-aspartate oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5435 lncRNA downstream 86105 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 485296 25063554 ~ 25068242 (-) True G4415
TU5352 lncRNA downstream 671929 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA downstream 679652 24868711 ~ 24873886 (-) True G4397
TU5304 lncRNA downstream 918043 24635290 ~ 24635495 (-) True G4353
TU5572 lncRNA upstream 439087 25997435 ~ 25998628 (-) False AMCG00003946
TU5621 lncRNA upstream 719096 26277444 ~ 26279767 (-) True G4602
TU5651 lncRNA upstream 801509 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA upstream 802068 26360416 ~ 26365069 (-) False G4624
TU5695 lncRNA upstream 975532 26533880 ~ 26586892 (-) False G4660
AMCG00003920 mRNA downstream 809348 24713229 ~ 24744190 (-) True AMCG00003920
AMCG00003921 mRNA downstream 844578 24697071 ~ 24708960 (-) True AMCG00003921
AMCG00003919 mRNA downstream 857796 24687213 ~ 24695742 (-) True AMCG00003919
AMCG00003916 mRNA downstream 869772 24656477 ~ 24683766 (-) True AMCG00003916
AMCG00003909 mRNA downstream 1257292 24288133 ~ 24296246 (-) True AMCG00003909
AMCG00003928 mRNA upstream 22423 25580771 ~ 25591487 (-) True AMCG00003928
AMCG00003929 mRNA upstream 101982 25660330 ~ 25696539 (-) True AMCG00003929
AMCG00003942 mRNA upstream 252972 25811320 ~ 25818975 (-) True AMCG00003942
AMCG00003940 mRNA upstream 289813 25848161 ~ 25851389 (-) True AMCG00003940
AMCG00003941 mRNA upstream 315799 25874147 ~ 25884138 (-) True AMCG00003941
TU5211 other downstream 1257762 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 1257762 24288131 ~ 24295776 (-) False AMCG00003909
TU5013 other downstream 2019656 23529519 ~ 23533882 (-) False AMCG00003893
TU5513 other upstream 339586 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 1306806 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 6751132 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6849454 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 7035279 32593627 ~ 32596407 (-) True G5566

Expression Profile