RNA id: AMCG00003928


Basic Information

Item Value
RNA id AMCG00003928
length 1728
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00003928
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25580771 ~ 25591487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATCCGTGGAGCTACTGTTTGACAAGCTGGGACACTTTAAAAGGTTCCAggcatgtgtgtattttgcagTTGTCTTCCAGGCTATTTCCTGTGGTATTCACTACCTAGCATCTGTGTTTCTGACTGCAACTCCCAAGTTTGTCTGCCGAGCTCCAGAGAACATCACTTCAGTCCTCTATGGCAATTACAGTGGAACCACTATGGATGATATCTGGGAGTACTGGTCTGCAGGCCAGAGCTATGTCCTGGTGGGGACAGAAAGTGGATCACAGTGGGAACTCAGTCAGTGTAGCCTCGCCAGGAGGATCAGCAGCATTAACTTTGACTACGAGTTCAGCGGCAATAAAACTGTGTACTCCTGCTCAGACAGTTACATCTATGATTACAGTGAGGTTCAGCAAAGCATTGTGACAGACTGGAACTTGGTTTGTGAGAAGGAGTGGCTTGCTAAGCTGTCCCAGCCCACTTTCATGTTTGGCGTTCTCACTGGAGCGCTGATTTTTGGAGACCTTGCCGATAGagTGGGGAGACGCCCAATCATGATGCTGACAAGCTTGTCTCAGTTTGGTTTTGGAATTGCAGTTGCCTTCACTTACAACTACTACTCGTTTGTTATTGTGCGTTTTCTTCTGGCTATGGTTACAAGCGGCTACCTGGTGGTAGTGTTTGTCTATGTGACAGAATTCACTGGGATCAAAGTTCGCACATGGACTTCCATGCACGTCCATGCAGCCTTTGCAGTGGGCATTATGGTGGTGGCCCTAGTGGGATACCTAGTGCGTATCTGGCGGATGTATCAGATCATCTTGACCCTGAGCACCCTCCCCTTCATCTTCATCTGCTGGAAGCTGCCCGAGACCCCCTTTTACCTGCTGGCCAAAGGCAGATACCAAGAAGCTCAAGTCCTCATAGATACGATAGCCAGGGTCAATGACATCACCACCTCTTGCAAGGTTTCAGACTTCATAGAATCCAATGGGGACAATATGATTGACAGAGATGCCACAAAACATCAGGAGGACATGGAACAGAAGAAGCTCAGCATCCTGGACCTCTTTCGCACACGTAAACTAGCTGGGAGGTCGATCACCTTGTGGCTAGTTTGGTTCACTTCAAGTTTAGGGTATTATGTAATTTCCCTGGGATCTGTCAATCTGGGAGGAAACCAATATTTAAACCTATTTATAGCAGGTGCTGTGGAGCTCCCTTCATACATCATTGCCTGCATTGCCATGGACAGAATTGGCAGAAGGAACACTTTAGCTCCATCGCTTCTCCTGAGTGGAATAGCATGCGCTCTCGTTATATTAGTGCCAAAGAATATTGGATTAGTGGCAATAATACTAAGCATGACTGGAAAGTTTGCCATAGCAATTGCCTTTGGTCTCATCTACCTCTACACATGCGAGCTTTACCCAACTATAGTACGGACTCTTGCGGTTGGCAGTGGAAGTATGATGTGTCGTGTTGGGAGTATAGTGGCTcctttctgtgtgtatttaacaaGTATTTGGACCCACCTGCCTCAGGTAATTATTGGAGTTTTGGCTTTCCTGATTGGCTTATTAACTCTGATGCTCCCAGAAACCCTTGGACAACCACTGACAACCACAATGGAAGAGGCTGAAGCACTGGgatccaaacaaaacaaggacaaaGAAGTAATTGGACCTGCCGAAGagaacattgaaattaactcTCAAAACCGAGAGAAAGATTTGGAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08212 SLC22A16; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5435 lncRNA downstream 113338 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 512529 25063554 ~ 25068242 (-) True G4415
TU5352 lncRNA downstream 699162 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA downstream 706885 24868711 ~ 24873886 (-) True G4397
TU5304 lncRNA downstream 945276 24635290 ~ 24635495 (-) True G4353
TU5572 lncRNA upstream 405948 25997435 ~ 25998628 (-) False AMCG00003946
TU5621 lncRNA upstream 685957 26277444 ~ 26279767 (-) True G4602
TU5651 lncRNA upstream 768370 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA upstream 768929 26360416 ~ 26365069 (-) False G4624
TU5695 lncRNA upstream 942393 26533880 ~ 26586892 (-) False G4660
AMCG00003927 mRNA downstream 22423 25553538 ~ 25558348 (-) True AMCG00003927
AMCG00003920 mRNA downstream 836581 24713229 ~ 24744190 (-) True AMCG00003920
AMCG00003921 mRNA downstream 871811 24697071 ~ 24708960 (-) True AMCG00003921
AMCG00003919 mRNA downstream 885029 24687213 ~ 24695742 (-) True AMCG00003919
AMCG00003916 mRNA downstream 897005 24656477 ~ 24683766 (-) True AMCG00003916
AMCG00003929 mRNA upstream 68843 25660330 ~ 25696539 (-) True AMCG00003929
AMCG00003942 mRNA upstream 219833 25811320 ~ 25818975 (-) True AMCG00003942
AMCG00003940 mRNA upstream 256674 25848161 ~ 25851389 (-) True AMCG00003940
AMCG00003941 mRNA upstream 282660 25874147 ~ 25884138 (-) True AMCG00003941
AMCG00003946 mRNA upstream 373933 25965420 ~ 25998628 (-) True AMCG00003946
TU5211 other downstream 1284995 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 1284995 24288131 ~ 24295776 (-) False AMCG00003909
TU5013 other downstream 2046889 23529519 ~ 23533882 (-) False AMCG00003893
TU5513 other upstream 306447 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 1273667 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 6717993 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6816315 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 7002140 32593627 ~ 32596407 (-) True G5566

Expression Profile