RNA id: AMCG00003929



Basic Information


Item Value
RNA id AMCG00003929
length 2349
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00003929
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25660330 ~ 25696539 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGGCCGGATATTTACACCAAATTCAAGATGTCGGCCACTATCTCAGCCCTCGTTTCTTACGGTACCGATTCTGGTTCAGATTCTGATGGCGATACTAAAGTCAGCCCCGACAAAAACGACCCAGATGCTACTGCACACCTTCGGCCATTGGTTTCTGTGCAGAAAACCTCATTAGCGAGCCTTAATTCAGCTCCGGAGGTCGCTGTAAAGGAAGATGTGGAAACCGGATCTCATCTGGACCCTTCACTCAAGGAGGTCACGTTTAACCCAACATATGAGACTATGTTTGCTCCAGAGTTTGGCCCTGTGAACCCATTTAAAACCCAGCAGATGTCTGCCCCACGAAACATGCTTTCCGGCTACGCAGAGCCCGCCCACGTCAACGACTTCATGTTTGAGCAGCAAAGGAGGACTTTCTCCACCTTCGGATATGCTCTGGATCCCTCCGTGGACAACAGTCAACTTTCATCCAGCAGTTTTATTGGCGCAGTGGAGGAGGCTGAGAAGAACAAAGgaTTAACAGTTTTTGAGGCAGGGgccaagaaaacagaaaaaaggaaaaaagtcaaAGGAACGGACGCTTCTGACATTGATGGCTTCCTGGGACCCTGGGCGAAATATGTGGATGAAAAAGATGTGGCTAAACCCTCAGAAGAAGAACAGAAGGAGCTGGATGAGATCACTGCCAAGAGACAGAAGAAAGGCAAACATGAGGAAGAGGCACCGGCAGACGAGAAGACAATTCTTCACGTCAAGGATGCATATGACTACCAGGGCAGGTCATATTTGCACATTCCTCAGGATGTGGGCATCAATCTGCGCACGGCTGACATTCCTGACAAGTGCTACCTGCCCAAAAAACAGATTCACGTCTGGTCTGGACATACAAAGGGTGTCAGTGCCATCAGGCTGTTTCCTCTGTCTGGTCATCTGTTGCTGTCCAGTTCAATGGACTGCAAGATCAAGttgTGGGAAGTTTACAACGAAAGGAGGTGTTTACGAACATTTATTGGTCATAGCAAAGCTGTTCGAGACATCTGTTACAATAACAACGGATCTCAGTTCCTCAGTGCAGCATATGACCGGTATCTCAAGCTCTGGGACACGGAAACAGggcaatgcatttcaagattCACAAACCGGAAAGTCCCATACTGTGTCAAATTTAATCCCGATGAAGACAAGCAAAACCTCTTTGTGGCTGGAATGTCTGATAAGAAAATAGTGCAGTGGGACATCCGGTCAGGGGAAGTTGTTCAGGAATACGATAGGCATCTCGGGGCTGTCAACACCATCACTTTTGTGGATGAGAACAGACGCTTTGTGAGTACCTCAGATGACAAGAGCCTCCGAGTCTGGGAATGGGACATTCCTGTTGACTTCAAGTACATCGCAGAGCCAAGTATGCATTCGATGCCTGCTGTGACTTTGTCTCCAAATGGGAAGTGGCTGGCCTGTCAGTCTATGGACAACCAGATCCTCATCTTTGGAGCCCAGAACAGATTCAGACTGAACAAGAAGAAGATCTTCAAGGGACACATGGTGGCCGGCTATGCCTGTCAAGTGGATTTTTCACCCGATATGAGCTATGTGGTTTCAGGAGATGCTGATGGGAAATTGAATATTTGGGActggaaaacaacaaagctGTATCACCGGATCAAGGCCCATGACAAAGTGTGCATCAGCGCACTGTGGCATCCTCATGAGACCTCCAAGGTCATCACGTGTGGCTGGGACGGCCAGATCAAGCTCTGGGACTAGTGAGGCCACAGTGCCAACAGCTCACACACCTGGCATGAGGGGAAGAGTAACTTCCTTTTTTGATTTCCCATTGATTTTTAATATGGCCCCCATAAACCTCCAGCAATGCTTGTAGGGCTGGCATCCAGTCCAACGGTGGGAGTgttcgtttttattttctttggtaTTGTGGTTCCAGGAACGGACGCTGGCAGTGCTGGGGACGGAGCAATTAATCAGACTGCTGTGCTTGCcaatacctttttatttttattacagatgtttgaaataaacaattttgTCATAACCCCTTAACTACCAAAGTTCTCACTGAATTGAATGGGTAggtttttcatttgatgtaaAACTCAATTTTCAGCTCTTTAGCAATGTCTGCAGACTCCTGTCATAATAAACTTTCATATGTTTCTAGTAAGCCTCTTTTGGAATAATTTGGACTCTATATATAGTCTGAGTGTGTATAACATAGAAGGTAATAACTGATGCTATAGGACTCTGAACTCTGAATAGAAAAAATCTATTCACAATTTTCAGTTGCAAAGCAGGTTCATATTTatgattgttttcttccttcttgAGGTTCC

Function


GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU5435 lncRNA downstream 192897 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 592088 25063554 ~ 25068242 (-) True G4415
TU5352 lncRNA downstream 778721 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA downstream 786444 24868711 ~ 24873886 (-) True G4397
TU5304 lncRNA downstream 1024835 24635290 ~ 24635495 (-) True G4353
TU5572 lncRNA upstream 300896 25997435 ~ 25998628 (-) False AMCG00003946
TU5621 lncRNA upstream 580905 26277444 ~ 26279767 (-) True G4602
TU5651 lncRNA upstream 663318 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA upstream 663877 26360416 ~ 26365069 (-) False G4624
TU5695 lncRNA upstream 837341 26533880 ~ 26586892 (-) False G4660
AMCG00003928 mRNA downstream 68843 25580771 ~ 25591487 (-) True AMCG00003928
AMCG00003927 mRNA downstream 101982 25553538 ~ 25558348 (-) True AMCG00003927
AMCG00003920 mRNA downstream 916140 24713229 ~ 24744190 (-) True AMCG00003920
AMCG00003921 mRNA downstream 951370 24697071 ~ 24708960 (-) True AMCG00003921
AMCG00003919 mRNA downstream 964588 24687213 ~ 24695742 (-) True AMCG00003919
AMCG00003942 mRNA upstream 114781 25811320 ~ 25818975 (-) True AMCG00003942
AMCG00003940 mRNA upstream 151622 25848161 ~ 25851389 (-) True AMCG00003940
AMCG00003941 mRNA upstream 177608 25874147 ~ 25884138 (-) True AMCG00003941
AMCG00003946 mRNA upstream 268881 25965420 ~ 25998628 (-) True AMCG00003946
AMCG00003945 mRNA upstream 310311 26006850 ~ 26015600 (-) True AMCG00003945
TU5211 other downstream 1364554 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 1364554 24288131 ~ 24295776 (-) False AMCG00003909
TU5013 other downstream 2126448 23529519 ~ 23533882 (-) False AMCG00003893
TU5513 other upstream 201395 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 1168615 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 6612941 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6711263 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6897088 32593627 ~ 32596407 (-) True G5566

Expression Profile