RNA id: AMCG00003930


Basic Information

Item Value
RNA id AMCG00003930
length 2120
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00003930
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25785173 ~ 25795795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCTGTTGCAGCTGAAGAACATAGATCGTCCGCAGGAGCCTGAGAAAGTGCCCCGGGCCCCTCATGATCGCCGTAAAGAGTGGCAGAAGCTCGCCCTGGGCCAGGAGCTGGCTGAGGATGATGCTGAAGACGTCCATAAGCACAAGGATGTGGCCAACGGCTCGGCAACATACTGTGATACAAGgcACCCTGTTTACATGGACCATATAGACGGACCGTTTTCTCTGGCAGCCCTTCCATACAGTCAGATGAATGAGCTGCTGAACAGAACCAGTGATCGAATGTATGTCCGGCCTCACGAgccccccccgcctcccccacTGCACAGCGTAGGAGACCTCAAGGCGCCATCCATTATCAGctccagctctggaTTGACAGACAGCCGTCCTCAGTCCCCGGCCAGGACCCCAGTGTTCCTCAACCCCAccgcacccccaccccctccaccccctcttCCCCCTCCTCCGCCGCCCTTACCCTCCACACTCCCCGGCTCGGGCCTGCGCTCCACTCCTCCTCCCCCCGTGCCGCCCCCGCCTCCAATGCAGCCCCCCGCCATCCCGCCTCCGCCTGCGCCTCTCCAGATTGCCCCCGGCGTCCTGCACCCTGCCCCGCCACCCATCGCCCCGCCCCTGGCCCAGCCCGCCTCCCCGGCCCGTCTCTCACAGGCTCTGGAGAAGGGCCCTCCCCCCCAGACAGAGGGCCTGATcctgcccccgcccccgccGCCCCCTCCCCTGCCCCTGCCCGGCCTCCGGACCTCCTCCCCCTGCCCCACGCCCCCTCCTCCCGGCCCTCCCCCTGTGCCTTCCTTCCTGTCAGGTACTGTCCCCTCCTTCCCCACACACGCAGGGCATGGTGCCGATGTCAAGCGGCACCCCTCAAATCTGCCCGTCATCAGCGACGCCAGGAGTGTCCTTCTGGAAGCAATACGTAAAGGTATTCAGCTCCGCAAAGTGGAAGAGCAGCGGGAACAGGAGGCGAAGCACGAGCGCGTGGGTAACGACGTGGCCACCATCCTGTCGCGACGCATCGCCGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTCGATGAGGTCGACTGGCTCGAGTGACAAACCCTGTGCAGAAAGTCcgagttctttatttaatttttattttttattttttgttctttttaaatttttgttttgtttttttccaccaaATAAGTGCTGTTCTCATTTGTGGTACTCGTTTTCagggtaaaagaaaaaaaaaatcactgttcTTTTCCAAGTGTTTTTTGCAACTGTTTTGTACTCATTTTCTACACGAcatcttaatttgttttccgaTGATCTGATAATCTCCTGgtgtacagttttaaaaaaggaagacGAAAATAAAAATTACCACCACGTTTTTCTTCCAGTGACTTTTCCAGAGAAGAGATCGCAGATGCTCTTTGTTTTGGAACTTGCCGTTGAGTATTAAGTCGGAGGTGGTCACCTTCTGGCTGACAGCAGAACTGAAGAactactgtaatttattttttattttttaatacaaccGGTTTCTAAAGGCTAATTGTTTCTGGTGCAAGCCAATGTTAAGGATTTACGACTCCTGAATATATAGCATGAGCAGCTAACCTACATAATTGCATTGACTGGGTGTTTCATTGTATGCGCACTTTGTGAGTACTGACTTGaagaaaccatttttaaactacaagacCCAAGGCAGCTGTTTATGACGTTACTACACTACATGTACAGAGCACGGTGAGCCTTACCCACTCTCTGATAACCGGACTCATGCCATTGCAGTCAGAATTGGCACCCTGCTTAGACGCAAACTGAAGAAggatgtttttactttaatctgCCTGTACTCCAAATAAAtagtcattatttttcagatactatgccttattatttttttggattattttttaaatttacttatttttattattattttttggttcatgaatgtactgtgctgtactactTTGCCTGCTCTCTTAAGGACTAGCTGTTTCTATGTGAAAAGACCTGATTTCAATACTGTATACTGTGTAACTTATGTAACTGATTTCCGTAACAGTTTGCTTGAATTAATAAAAGCTAATGTTATGTTTAAAGTA

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5466 lncRNA upstream 174877 25610078 ~ 25610296 (+) True G4482
TU5432 lncRNA upstream 231084 25481598 ~ 25554089 (+) True G4452
TU5313 lncRNA upstream 1098036 24685016 ~ 24687137 (+) True G4362
TU5310 lncRNA upstream 1120990 24663939 ~ 24664183 (+) True G4359
TU5309 lncRNA upstream 1122392 24657907 ~ 24662781 (+) True G4358
TU5503 lncRNA downstream 18496 25814291 ~ 25888313 (+) True G4512
TU5526 lncRNA downstream 133672 25929467 ~ 25929680 (+) True G4526
TU5542 lncRNA downstream 148348 25944143 ~ 25944352 (+) True G4536
TU5581 lncRNA downstream 287534 26083329 ~ 26085122 (+) True AMCG00003948
TU5608 lncRNA downstream 429698 26225493 ~ 26227500 (+) True G4589
AMCG00003931 mRNA upstream 17385 25763983 ~ 25767788 (+) True AMCG00003931
AMCG00003933 mRNA upstream 37732 25735715 ~ 25747441 (+) True AMCG00003933
AMCG00003934 mRNA upstream 139872 25632524 ~ 25645301 (+) True AMCG00003934
AMCG00003935 mRNA upstream 236551 25518913 ~ 25548622 (+) True AMCG00003935
AMCG00003932 mRNA upstream 325222 25425817 ~ 25459951 (+) True AMCG00003932
AMCG00003939 mRNA downstream 108590 25904385 ~ 25915025 (+) True AMCG00003939
AMCG00003938 mRNA downstream 119625 25915420 ~ 25927139 (+) True AMCG00003938
AMCG00003937 mRNA downstream 137232 25933027 ~ 25938329 (+) True AMCG00003937
AMCG00003943 mRNA downstream 144087 25939882 ~ 25943047 (+) True AMCG00003943
AMCG00003944 mRNA downstream 150848 25946643 ~ 25965249 (+) True AMCG00003944
TU5311 other upstream 1101253 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2072039 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 3861386 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4024543 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 4235640 21549201 ~ 21549533 (+) True G3751
TU5898 other downstream 2266568 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 2266879 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4475415 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 5092200 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 7334325 33130120 ~ 33131186 (+) True G5642

Expression Profile