RNA id: AMCG00003933



Basic Information


Item Value
RNA id AMCG00003933
length 324
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00003933
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25735715 ~ 25747441 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCATTAGTGAAGAGGAACATCGAGCCCAGGCACCTGTGTCACACAGTGCTGCCCAGAGGCATTAAGAATGAGCTGGAATGTGTGACCAACGTCTCCCTGGCAAATATCATACGGCAGCTCAGCAGCCTGAGTAAATATGCAGAGGACCTGTTTGGGGAACTTTTCAATGAGGCGCATACCTTCTCCTTCCGGGTGAACTCTCTGCAAGAGCGCGTGGACCGCCTCTCCATCAGTGTCACTCAGCTGGACCCCAAGGAGGAGGAACGTAAGTGTGCCTCACCACACCGAGCCTCCCGCCATATCCTCTTCAGCAGCACATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU5466 lncRNA upstream 125419 25610078 ~ 25610296 (+) True G4482
TU5432 lncRNA upstream 181626 25481598 ~ 25554089 (+) True G4452
TU5313 lncRNA upstream 1048578 24685016 ~ 24687137 (+) True G4362
TU5310 lncRNA upstream 1071532 24663939 ~ 24664183 (+) True G4359
TU5309 lncRNA upstream 1072934 24657907 ~ 24662781 (+) True G4358
TU5503 lncRNA downstream 66850 25814291 ~ 25888313 (+) True G4512
TU5526 lncRNA downstream 182026 25929467 ~ 25929680 (+) True G4526
TU5542 lncRNA downstream 196702 25944143 ~ 25944352 (+) True G4536
TU5581 lncRNA downstream 335888 26083329 ~ 26085122 (+) True AMCG00003948
TU5608 lncRNA downstream 478052 26225493 ~ 26227500 (+) True G4589
AMCG00003934 mRNA upstream 90414 25632524 ~ 25645301 (+) True AMCG00003934
AMCG00003935 mRNA upstream 187093 25518913 ~ 25548622 (+) True AMCG00003935
AMCG00003932 mRNA upstream 275764 25425817 ~ 25459951 (+) True AMCG00003932
AMCG00003936 mRNA upstream 579490 25155707 ~ 25156225 (+) True AMCG00003936
AMCG00003924 mRNA upstream 598455 25092384 ~ 25137260 (+) True AMCG00003924
AMCG00003931 mRNA downstream 16542 25763983 ~ 25767788 (+) True AMCG00003931
AMCG00003930 mRNA downstream 37732 25785173 ~ 25795795 (+) True AMCG00003930
AMCG00003939 mRNA downstream 156944 25904385 ~ 25915025 (+) True AMCG00003939
AMCG00003938 mRNA downstream 167979 25915420 ~ 25927139 (+) True AMCG00003938
AMCG00003937 mRNA downstream 185586 25933027 ~ 25938329 (+) True AMCG00003937
TU5311 other upstream 1051795 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2022581 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 3811928 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 3975085 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 4186182 21549201 ~ 21549533 (+) True G3751
TU5497 other downstream 46611 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 2314922 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 2315233 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4523769 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 5140554 30887995 ~ 30894827 (+) True AMCG00004056

Expression Profile