Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00003935 |
| length | 1008 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 7 |
| gene id | AMCG00003935 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 25518913 ~ 25548622 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008146 | sulfotransferase activity | molecular_function |
| id | description |
|---|---|
| K03193 | UST; dermatan/chondrotin sulfate uronyl 2-O-sulfotransferase UST |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU5313 | lncRNA | upstream | 831776 | 24685016 ~ 24687137 (+) | True | G4362 |
| TU5310 | lncRNA | upstream | 854730 | 24663939 ~ 24664183 (+) | True | G4359 |
| TU5309 | lncRNA | upstream | 856132 | 24657907 ~ 24662781 (+) | True | G4358 |
| TU5305 | lncRNA | upstream | 871158 | 24647509 ~ 24647755 (+) | True | G4354 |
| TU5302 | lncRNA | upstream | 908351 | 24610274 ~ 24610562 (+) | True | G4351 |
| TU5466 | lncRNA | downstream | 61456 | 25610078 ~ 25610296 (+) | True | G4482 |
| TU5503 | lncRNA | downstream | 265669 | 25814291 ~ 25888313 (+) | True | G4512 |
| TU5526 | lncRNA | downstream | 380845 | 25929467 ~ 25929680 (+) | True | G4526 |
| TU5542 | lncRNA | downstream | 395521 | 25944143 ~ 25944352 (+) | True | G4536 |
| TU5581 | lncRNA | downstream | 534707 | 26083329 ~ 26085122 (+) | True | AMCG00003948 |
| AMCG00003932 | mRNA | upstream | 58962 | 25425817 ~ 25459951 (+) | True | AMCG00003932 |
| AMCG00003936 | mRNA | upstream | 362688 | 25155707 ~ 25156225 (+) | True | AMCG00003936 |
| AMCG00003924 | mRNA | upstream | 381653 | 25092384 ~ 25137260 (+) | True | AMCG00003924 |
| AMCG00003923 | mRNA | upstream | 552546 | 24884196 ~ 24966367 (+) | True | AMCG00003923 |
| AMCG00003926 | mRNA | upstream | 650051 | 24852660 ~ 24868862 (+) | True | AMCG00003926 |
| AMCG00003934 | mRNA | downstream | 83902 | 25632524 ~ 25645301 (+) | True | AMCG00003934 |
| AMCG00003933 | mRNA | downstream | 187093 | 25735715 ~ 25747441 (+) | True | AMCG00003933 |
| AMCG00003931 | mRNA | downstream | 215361 | 25763983 ~ 25767788 (+) | True | AMCG00003931 |
| AMCG00003930 | mRNA | downstream | 236551 | 25785173 ~ 25795795 (+) | True | AMCG00003930 |
| AMCG00003939 | mRNA | downstream | 355763 | 25904385 ~ 25915025 (+) | True | AMCG00003939 |
| TU5311 | other | upstream | 834993 | 24683400 ~ 24683920 (+) | True | G4360 |
| TU5028 | other | upstream | 1805779 | 23710238 ~ 23713134 (+) | False | AMCG00003898 |
| TU4606 | other | upstream | 3595126 | 21922636 ~ 21923787 (+) | True | G3799 |
| TU4563 | other | upstream | 3758283 | 21745850 ~ 21760630 (+) | True | G3771 |
| TU4541 | other | upstream | 3969380 | 21549201 ~ 21549533 (+) | True | G3751 |
| TU5497 | other | downstream | 245430 | 25794052 ~ 25795791 (+) | False | AMCG00003930 |
| TU5898 | other | downstream | 2513741 | 28062363 ~ 28103211 (+) | True | G4831 |
| TU5899 | other | downstream | 2514052 | 28062674 ~ 28067786 (+) | False | G4831 |
| TU6431 | other | downstream | 4722588 | 30271210 ~ 30271524 (+) | True | G5245 |
| TU6554 | other | downstream | 5339373 | 30887995 ~ 30894827 (+) | True | AMCG00004056 |
