RNA id: AMCG00003937


Basic Information

Item Value
RNA id AMCG00003937
length 2333
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00003937
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25933027 ~ 25938329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCAATCCGGTAGAAATAAGCGCTGTGCTTCTCAGTATAGCCTAAGTGTACGTTATCTTCAGTACAGCTGGTAAGATGGGTTAGTCTAGGATGATTGTCCCATGTTCTTCAGCCCtttaaattgtatatcttgTACTTGTTGGAAAATAAGGAATCAACCATTTCTGCATTACAGGATGGCACAATCTCCACAAACCCCAACAACCTCTCATTTCGCCCTTTATTCCAGTGCCCacaaggacacaattttaaGCAAATTTGAGGAACTTAGGAAAAAGGATTTGTTGTGTGACATCACTCTGATTGTTGAAGATGCCCAGTTTAAGGCCCACAAGGCCTTGCTGGCTGCCAGCAGTGAGTATTTCTCTGTGATGTTTACTGGTGAGGGACAAGTGTGCCAGTCTATCTACATGCTGGATGGGATGGCTGCAGACACTTTCAGAGCAGTGCTGGAGTTTATCTACACTGGGCATGTGTCTGTGGAGAGGAGCACCGCAGAGCAGCTCCTGGCGATGGCCCACTACCTGAAAGTCGTTGACCTTGTGAAGGCTTACACCGAGTTTCAGAGTATGCACAGGCCCAGTCAGGATGGGAAATCGGATTCACACCAGAGAGGAGAAAATAATGAGGAGGCTGTTAAACCCAAACGCAAAAGAGGTCGGCCAAGGAAGGATGAGGTTTTGACAGGGGCATCAAATGCTGCAGCTCCTGgttcaagtaaaataaaagaagcCCCAGGGATCAATAATCTAGTGACTTGTGTTCAGGAGGCAACAGTGCAACCGGTTATAGAAGAACCTATAGAAGAGAACAGAGAGAGTGAAGACGTAGCAGATTCTGATGCCCACATGGATCCTTCCAATGACAAAGATGTGGACTATGACCCCAAATTGGAGGGGAAGCTGTGTCCCCGTAGCCGCTACAGCAAGCGCAGGATAAAGCCCCCGGTGAAATTGATTGGCTTTCGGCTGGGAGAAGATGTTGCTGAGCAGGGAGAGCCTGGGaaaagagggaggaagaggaaataTCCCAAAACTGAGGCCCGCTGTGAGGATTGTGGGAAAGTCTTCaaaaaccatttgtttttaacaatccACCAAAGAACACATACTGATCAGAAATCTTTCAGCTGTGATCAGTGTGGGAAGACTTTCAGTCAGAGAAGGCAACTGAAGAGTCATTACCGAGTTCACACAGGTAAGCCCTTACCAGAGTGTGCACAGTGCCATCGAAGGTTCATGGATGCTGCTCAGCTTAAGAAGCATCTGAGAACACATACAGgagagaaaccatacatTTGTAGCCTCTGCAACAAGTCTTTCTCAGACCCGAGCGCCAAGAGACGCCATGTTACTTCTCACACTGGGAAGAAGCCTTTCACCTGCTCCCTCTGCAGCCTGACCTTTGCCCGACTCGACAACCTCAAAGCTCACACCAAAACGCACAACAAGGAGCGGCCCACAGAGGTCCCTCGAGAGGTGGCGACCGTTGAGGGAAATGCAGGGGTGGAGGAGGTGCGCAGCATTCTGCAGCTCCAGCAGTACCAGCTCCCCACCTCAGGGGAGCAGGAGATCCAGCTGGTGGTCACCGGCGAGGTGGACAACATTAACTTCGTGCCCGGAGAGGAGCAAGGCATAAGCATCATCACCGCCCAGGCCTCGGAGAGTCTGACTCCAGAGCAAACGTCAGGGCTGACCTTGCTGACGCAGCCCTCTCAGCACGTGCAGAACCTGGCCCTGGTCACTCAGGGAGAGACGGCCGAGCAGATCCAGACCATCAGTGTCATGGAGGGTCAAGTGTCTACAGGGCAGCCTGAGCAGATGCATGTGATCACCCTGACGAAGGAGGCCATGGAGCACCTGCAGGCCCACCACGGGCCGCCCCAGCAGCTACAGATCAACCAGCGGGCCGGCCAGTCTCTCCACCTGATGCAGGAGTCCACCCATCAGCTCCCCATCGCCCAGGCACCTCAGCCTCAGCAGCTGCAGATGGGCAGAGACCAGCAGGGCCAGGCCATACACATCAGTGGCCAGACTGCCCAGCCCATCTCCATCAGCCAGACGACTCAGCAGATCCCCAGTCACCAGATTCAAGGGCAGACGTTCCAGATCCAAGCTGGCACTGTGTCCTATCTCTATACCACCAGCTTAGCCCCGCAGAACTGAACTGGGGTGGGATGTGTCTTTGATACTGCTTACAAAAGTGGACTTGTCAGTTCATCATTCTGCAGTTTTAGTACTGGATTGTCTTGTAAGCAatgtctgatttctattaaaaacTCGCAGctctgatttttcttttccttttaattgaagtgatcttgaaaatgttt

Function

GO: NA

KEGG:

id description
K10503 ZBTB24, BIF1; zinc finger and BTB domain-containing protein 24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5526 lncRNA upstream 3347 25929467 ~ 25929680 (+) True G4526
TU5503 lncRNA upstream 44714 25814291 ~ 25888313 (+) True G4512
TU5466 lncRNA upstream 322731 25610078 ~ 25610296 (+) True G4482
TU5432 lncRNA upstream 378938 25481598 ~ 25554089 (+) True G4452
TU5313 lncRNA upstream 1245890 24685016 ~ 24687137 (+) True G4362
TU5542 lncRNA downstream 5814 25944143 ~ 25944352 (+) True G4536
TU5581 lncRNA downstream 145000 26083329 ~ 26085122 (+) True AMCG00003948
TU5608 lncRNA downstream 287164 26225493 ~ 26227500 (+) True G4589
TU5609 lncRNA downstream 290599 26228928 ~ 26229252 (+) True G4590
TU5611 lncRNA downstream 305333 26243662 ~ 26244054 (+) True G4592
AMCG00003938 mRNA upstream 5888 25915420 ~ 25927139 (+) True AMCG00003938
AMCG00003939 mRNA upstream 18002 25904385 ~ 25915025 (+) True AMCG00003939
AMCG00003930 mRNA upstream 137232 25785173 ~ 25795795 (+) True AMCG00003930
AMCG00003931 mRNA upstream 165239 25763983 ~ 25767788 (+) True AMCG00003931
AMCG00003933 mRNA upstream 185586 25735715 ~ 25747441 (+) True AMCG00003933
AMCG00003943 mRNA downstream 1553 25939882 ~ 25943047 (+) True AMCG00003943
AMCG00003944 mRNA downstream 8314 25946643 ~ 25965249 (+) True AMCG00003944
AMCG00003947 mRNA downstream 81215 26019544 ~ 26019825 (+) True AMCG00003947
AMCG00003948 mRNA downstream 142954 26081283 ~ 26083886 (+) False AMCG00003948
AMCG00003954 mRNA downstream 319097 26257426 ~ 26257668 (+) True AMCG00003954
TU5497 other upstream 137236 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1249107 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2219893 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4009240 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4172397 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 2124034 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 2124345 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4332881 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4949666 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 7191791 33130120 ~ 33131186 (+) True G5642

Expression Profile