RNA id: AMCG00003938


Basic Information

Item Value
RNA id AMCG00003938
length 3546
RNA type mRNA
GC content 0.51
exon number 21
gene id AMCG00003938
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25915420 ~ 25927139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGAGTTGGAGTTGGAGCCCGAGCCCGAGCCCGAGCAGGAGGACAGTCAGCCCAAACTGGAGGCCGTGCAGGAGGAGCCTGAAGCAACAGAGACATCAGACAAGTCCCACCCTGGAACACTGCCCGACACAGTAGACCAACAGCCACATGCAGATAAAGATGCCATTCAGACAGACCCTGAACATAAGCCAAAGACCATCCCTGAAGTAAAAGACATAGCATTACCTCCGGTTTGGGAGAATGGATTCCCAGAGGGTCCTGAGATGGAGCCCTTCAGACAGCAGGTGAAAGTCTTTGTGCAGGATTGGGAGGCCATGGAAGCCTCCATCCCAGGAGCTTCTCTCTGTCTTGTGGAGATGAATGGGAAAACCCCCGAGAGCCTGCTGAGCGAGGCTGTGTCCCACATGGAGAGACCTTTCAAGTACGCAGCCTGGGAGCTGTCTGGGGTGGACCtcgatgaggaggaggaggatgctCACGCACTGGCAGACATGGagcaggcagaggaggagggagaagaggaggaagaggaggaggcagagGAAGAAGGCGGCACTCGTAAAAGGCAGCTTGGAGATACTGCTCACTTCTGCCCGGTCACTctcaaggaaaaaaatgtactgtttccCTGCGCTGATGAGTATGCAGCTAAATACCGTGAAAAAGTCTACTACTTCTCCAGTCCAGAAGCCCGGGAGAAATTTTTGCAATGCCCAGAGGTGTATGTGTCCCATACCAAGCTGCTGAAAGCTCCCCCACTGAGAGTGTTTCTGCTGGGGGCTCGTGGCTCTGGCAAAACCACCCATGGCAGATCTCTGGCCAACAAACTGGGCATCTTCCACATCCAATTCAGAGAGCGACTGCAGGAGATGATCATCCGCAAAACCAAGGGCAAAATCCCATTCGCTGACGAAGCAGAGCCAGAGGAGGAGGCCCCTGAGGACCTGGAGGCTCTGCTGGCCTCTGAGGCCCCCGAGGAGCCGACAGACGCCAAGGCTGCGGCCACTGCTGTGGATGGCCCCGAGCACCCAGATGCAGAGCAGCTGGCCCTCACAGATGAAGAGGAAGCAATCAAAGCCTACCTGTCTGATGGAGAACCCTTACCCACAGAGATCCTGGACATGGTCTTGCCACAGTGGTGGGACGAGGAGCCATTCAGGTCCACAGGTTTTATACTGGAAGGCTTCCCACAGAACTCGGAGGAAGTTCAGTACCTGGCCGAGCAGAGCCTGTTCCCTGACATCGCTGTGATCATGTCTCTGGAGGCCACTGATGTGGTGGAACGGCTTCTGCCCCCTCGCTTAGCCCGGTGGAGGGAGAGGCGAGACAGGAAGATGGAGCTGCAGAGGAGAGTCAGAGAAATCAAGAACAGAATCAGGGAGGACAAAATTGCTAAAAGAAGAGCTGAACTTTTAGCAGAACAAGCAGAAAAACTGGCAGCTGGAAAGGCGAAAGAGGATGAAGTGGAGGGCAGTGAtgaagagcaggaggaggagatggaggaggagatTGAGGCCTTGATTCTGGAGGAGTTCCCTCCAGacgaagagggagagggagaggaggaagaacaGGAGGTCAATGCCACAGAACGATTGGAAATGGAAATAGGAGACAGGTTTGAAACCGATATCACCAACCTTCAAATCTTGCAGgaTGCCTTAGCTGATCTACACATACCCCAGATATCCATCAGTGCTGGGCGCAAGTCTCATATTGTAAGGTTCCAGCTCTGTGAGAGACTGAAGTCCCTGGTGGAGAACAGGGAAGCAGTCTTTGAGAAGTGCTACCCACTGAGCATCGGCCTTGCTCGCAAATTGCTGCGCCATTCATTTAAATACTACAGTGCTTTTGGGTGCTGGGACCCTGTCAGGCTCAGTGAAGGGGATGTGATTCAGCCCATTCAAGGTCCCAAGAACCCTACTTATCCTGTGCTCTACCGccagttcatttatttttttgcatccAAAGACACCCGCAGCAGATTCATCGTGAACCCCATTAAATATCTTCAGCAAGACAAGCCTAAACCTTCGTTGCCAATCAAAATCGCTGTTGTTGGCCCACCCAAATCTGGAAAAAGCACTGTTGCGAGGATGTTTGCCGGGGAGTATGGCCTGCAGCGGCTGTCCATAGGGGAGGCTATGCGGCTGGTGTTGTCCaatcagaaacaaacagaactgGCCTGTCAGATGAGCAAGCATCTCACCAAAGGCTTGACTGTTCCTGATGAACTTGCTATTCAGTGTCTGGAAGCAGCACTAATGGACCTTGTGTGCAGTACCAGAGGGTTTGTTCTTGATGGGTACCCTATGACAAAGAGGCAGGTTGACCTCATGGCAGCCCGAAGTATTATCCCCATCAGGGTGCTGGAACTGCAGGTGGACACTAAGGAGGTTTTAAAGAGAGGCTTAATGGATAAAATGAATGCTGTCAGATCCTATCCAGTTCATGACAGTCCCCAAATTCTCACTATCCGCAATGCCTGCTACAAGCGTGATGTTGAGGCTGTGAGAGAGTACTATCAACAGCATTTCCAGAACTGGGTGGTAATCGATGGTCACCGGAGCAAGTGGTGGGTGTGGAATAAGGTGCTTGAAGAGTCCAGGATAAGTGTGAAACATATCCAGAGCTACCTGGAGAGGATTAGACAAGGGAGAGCAGCCTGCATTGATCGGCTGTGCATCACGCCCCAGGAACTGAAGTCTCGGCTCGGTGAATTCGGCCAGTACTGCCCCGTGAGCCTGGCGCTGCACCGGGAGCTGCAGGACTGCGCTGTCTCCGCTTCCTTGGAATTCGCAGCAGAGTTCCGTGGACATTATTACAAAATGGCTTCCAAGGAGAATTTGGAGAGATTCCTTGAAACACCAGAGCAGTTTGTTATCCCGTTGGCCCCACATCCTCTTCCTCCGACTCACATGTTGCCAAAGAGGCTGACAGCTGCAGAGGTAAAGGCTAAGTTCCCTAAACAGGTGGAAATGCAGGGATACTGCCCAGTGACTTACATGGATGGAAAGCAAAGGTATGAAGCTCTTGTGTCTGGAAACATTGAGCACGCTGTTGAGTACAGGGAGAAAATCTTTACTTTTGATGATGAGCAGAAGCTACAGAAGTTCATGAGGTTACCTGAAACCTACTGGAACCAAAAGCTTCCACACAAACTTCCCCCAAAAAAGGAACCTGTGTTGCTCACATCTCTTCCAATGCTTGGCTACCTTGAACAAggcacagcaacagcagtaaCAAAAGCTCTTACAGCTGTTGGATGCTTGAAGCCAAAATATCCATTCCTCAGTGTGAAGAAATCTGCCCTTCTGTATGTTGCATATCATCTGAAAGcttaCAATTCCAGAAATTCAGAATACATTCGCAAGAAATACAAGAAGAAGATGGAGAGATTTGAGGAAAGCTGTGAGCTCATCTCATACCTGGGATCAAAAATGACTCAAAAATACAAAGAACCTCGGGAGCGTCCCATTGACTTTGATCACAAACTTCAAACCTTCCTGGCCCTTAAAGGCACTGAGCCTACTTCCACCTGG

Function

GO: NA

KEGG:

id description
K18533 AK9; adenylate/nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5503 lncRNA upstream 27107 25814291 ~ 25888313 (+) True G4512
TU5466 lncRNA upstream 305124 25610078 ~ 25610296 (+) True G4482
TU5432 lncRNA upstream 361331 25481598 ~ 25554089 (+) True G4452
TU5313 lncRNA upstream 1228283 24685016 ~ 24687137 (+) True G4362
TU5310 lncRNA upstream 1251237 24663939 ~ 24664183 (+) True G4359
TU5526 lncRNA downstream 2328 25929467 ~ 25929680 (+) True G4526
TU5542 lncRNA downstream 17004 25944143 ~ 25944352 (+) True G4536
TU5581 lncRNA downstream 156190 26083329 ~ 26085122 (+) True AMCG00003948
TU5608 lncRNA downstream 298354 26225493 ~ 26227500 (+) True G4589
TU5609 lncRNA downstream 301789 26228928 ~ 26229252 (+) True G4590
AMCG00003939 mRNA upstream 395 25904385 ~ 25915025 (+) True AMCG00003939
AMCG00003930 mRNA upstream 119625 25785173 ~ 25795795 (+) True AMCG00003930
AMCG00003931 mRNA upstream 147632 25763983 ~ 25767788 (+) True AMCG00003931
AMCG00003933 mRNA upstream 167979 25735715 ~ 25747441 (+) True AMCG00003933
AMCG00003934 mRNA upstream 270119 25632524 ~ 25645301 (+) True AMCG00003934
AMCG00003937 mRNA downstream 5888 25933027 ~ 25938329 (+) True AMCG00003937
AMCG00003943 mRNA downstream 12743 25939882 ~ 25943047 (+) True AMCG00003943
AMCG00003944 mRNA downstream 19504 25946643 ~ 25965249 (+) True AMCG00003944
AMCG00003947 mRNA downstream 92405 26019544 ~ 26019825 (+) True AMCG00003947
AMCG00003948 mRNA downstream 154144 26081283 ~ 26083886 (+) False AMCG00003948
TU5497 other upstream 119629 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1231500 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2202286 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 3991633 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4154790 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 2135224 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 2135535 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4344071 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4960856 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 7202981 33130120 ~ 33131186 (+) True G5642

Expression Profile