RNA id: AMCG00003939


Basic Information

Item Value
RNA id AMCG00003939
length 2088
RNA type mRNA
GC content 0.46
exon number 16
gene id AMCG00003939
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25904385 ~ 25915025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGTCTTTGTCGACAGCCTTATTGAAGACGACTCCGAAAGAGATTTTCTACTGTCTAAACccacttgttttttaattattggaaAACCTGTGAGTGGACAACAACTTCTGTGCTGCTCTCACTTGTTCAACAGCCTTGCACTAATATATGGAAATTACGTATTTACTCAAGTGTTGTCAACCCAGAAAGATACCCTTTTATCagatattgattttgttatagATCTGTACTTTCTCAGCAAGTTTGGTGgcaagtATACTGAATTGATCAATCACCATATTACAACACAGACAGAACATGGACTGAAAtTCCTGGAGATTCTTAATGAAGGGAAAAGCATTCCTGAAGAGATGATGACCAAGCTTATTCTAGAAAAGCTCAACTCACCTGAGGTGGAACATTATGGTTATGTTCTAAGCAGCCTCCCCTCGATGTCAGAAGACTACCTGAAGATTCCAGAACAGATAGAAATGATAAGAAATCTTAAACTTTCCCCAGATTTTATCATTAACATCAAGTGTGCAGACTACGACCTGAGTCATCGGCTTTCTGGACAAAGGCAAAATCCAGAGACAGGGAAAGTATATCAAAAGGAACAGTGGGACCCTGTGAGAAAAgaagtaaagaaaagaaaaagagattatcagggggaggaggaggaggaggaggaggaagaagaacaCTTGGAGGAAGCTGATGAAGAAgaagaggaagaagagctTGAGAAGGACATGTATTCACAACTGGTGAGGCAGCCTGAAGACTTCCCAGAAAGAGCCATAGAAAGAATCGTGCTTTACAAAGACACAATGCTTCGATCTTTAGAGGATTACATGGCTGACCATGATCCACTCTATCTGTTTGAGCTTGATGGAAACAAGAGCTCTACTGACCTGTATTTGTCGGTGATGTCCCGTTTGGAGTCCATGGCGGTGAGGAGCGCCGCGGTACCAATCAGACTGCTGCCACCTGACGACGAGGACGTGCCAGAGGAGATTGACAATGAAGAACTGCTGCGGACCTTGTCAGGGTATAAGATGGTGACTCCTGGGTACAGGTGGAGGAGGAGTCGCTGGGGCCGCACCTGTCCTGTAGCTCTGAAACAAGGTGACATCATCCAGGGAAAGCATGAGTTCTCCATCGGGTTCCTGGATAAAATGTACATCCTTTCAAGCCAGGAAGCTTTACAGAAATTCATGCTGAACCCACGGCCATACCTCCTCCCCCCAATGCCCAGACCCCCCTGCAAAGTAGCACTGATCGGACCCCCATCATCAGGAAAAACAACTCTCTGCAGATTGCTTGCAGAAAAGTACAACGCAAAGGTGGTGGACATGGAGGTAGCTATCCAGCCTGTGATTGCTGAAGAGCGACAGAGTCTGCTGCATAAAGCACGGGAAGAGGCCCTGGCGTCTGCGATAACCGAAGTTCAGATGAAGCTACAACAAGAACACCTTAAAAAAGCAGCTGCAAGTGAAAGCTGTGCTAAGGCAGCCTTGGACAAGGAGCAGGAGTCTGAGTCTGAGCACGACCTGGCAGCGTCCCCTACAGACGAGAGCCAGGAACCAGCCAAGATAGACAGTGTATCATTTCCAGATGAAGAAGTGGAAGAGTCTGCTGATCACAAGTCTGAGGAACAGGCAGAAACAGCTGCATCTTCTTTGAGCGAAAAGAGTACAGATGAAGTGCCGGAAGTGACAGCTGACCACCCCGAGGTCCAAGCTCTCCTTTTGGAGGCTGTTAAGAAAGCAGAGCAGCTCCCCATCACACTCTCCCCAGATGTGTATGCCGATACACTGGAGAAGCATATCAGTCAGATAGGTACCGATACAGAGGATCTAGCTGGAAAGGGGTGGGTGCTGGATAACTTCCCAAGAAACAGAGATCAGCTGACATCCATGCAGGAAAGGGAAATCATGCCAGATACATTCATCTGCTTGAGAGACAATGAAGAGGATGGAAAATACCTCTTGACTAGAATTTATGAACTCCACAAAGATGAAATTAACTCTGCCATAATGGAAAGACTGGAAGAAGAGGAACGACTTAAAGCCCTTGAAGCACAGGAGGCATTGTGCGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5503 lncRNA upstream 16072 25814291 ~ 25888313 (+) True G4512
TU5466 lncRNA upstream 294089 25610078 ~ 25610296 (+) True G4482
TU5432 lncRNA upstream 350296 25481598 ~ 25554089 (+) True G4452
TU5313 lncRNA upstream 1217248 24685016 ~ 24687137 (+) True G4362
TU5310 lncRNA upstream 1240202 24663939 ~ 24664183 (+) True G4359
TU5526 lncRNA downstream 14442 25929467 ~ 25929680 (+) True G4526
TU5542 lncRNA downstream 29118 25944143 ~ 25944352 (+) True G4536
TU5581 lncRNA downstream 168304 26083329 ~ 26085122 (+) True AMCG00003948
TU5608 lncRNA downstream 310468 26225493 ~ 26227500 (+) True G4589
TU5609 lncRNA downstream 313903 26228928 ~ 26229252 (+) True G4590
AMCG00003930 mRNA upstream 108590 25785173 ~ 25795795 (+) True AMCG00003930
AMCG00003931 mRNA upstream 136597 25763983 ~ 25767788 (+) True AMCG00003931
AMCG00003933 mRNA upstream 156944 25735715 ~ 25747441 (+) True AMCG00003933
AMCG00003934 mRNA upstream 259084 25632524 ~ 25645301 (+) True AMCG00003934
AMCG00003935 mRNA upstream 355763 25518913 ~ 25548622 (+) True AMCG00003935
AMCG00003938 mRNA downstream 395 25915420 ~ 25927139 (+) True AMCG00003938
AMCG00003937 mRNA downstream 18002 25933027 ~ 25938329 (+) True AMCG00003937
AMCG00003943 mRNA downstream 24857 25939882 ~ 25943047 (+) True AMCG00003943
AMCG00003944 mRNA downstream 31618 25946643 ~ 25965249 (+) True AMCG00003944
AMCG00003947 mRNA downstream 104519 26019544 ~ 26019825 (+) True AMCG00003947
TU5497 other upstream 108594 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1220465 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2191251 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 3980598 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4143755 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 2147338 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 2147649 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4356185 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4972970 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 7215095 33130120 ~ 33131186 (+) True G5642

Expression Profile