RNA id: AMCG00003940


Basic Information

Item Value
RNA id AMCG00003940
length 273
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00003940
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25848161 ~ 25851389 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAAAGACCGTTGGAATTGATCCGAGCCCCTTCACTGTTCGCAAACCAGAGGAGACTGGGAAATCAGTGTTAAGCAACAAGAGCAACAAAGAGGAGACTGTTCTACAGAGGAAGACTGCGGCCAGTGCACCCCCCCCGCCCAGCGAAGAAGCCATCTCCAGTAGCTCGGAGGATGACTCTGGGACTGATAAGGAGGAAGAAGGGGCTGTCTCTCAACGCTCCACGCCCATCAAGTTTGCTGACTCAGGAGAAGGCAATCGGACCCAAGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042578 phosphoric ester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5435 lncRNA downstream 380728 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 779919 25063554 ~ 25068242 (-) True G4415
TU5352 lncRNA downstream 966552 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA downstream 974275 24868711 ~ 24873886 (-) True G4397
TU5304 lncRNA downstream 1212666 24635290 ~ 24635495 (-) True G4353
TU5572 lncRNA upstream 146046 25997435 ~ 25998628 (-) False AMCG00003946
TU5621 lncRNA upstream 426055 26277444 ~ 26279767 (-) True G4602
TU5651 lncRNA upstream 508468 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA upstream 509027 26360416 ~ 26365069 (-) False G4624
TU5695 lncRNA upstream 682491 26533880 ~ 26586892 (-) False G4660
AMCG00003942 mRNA downstream 29186 25811320 ~ 25818975 (-) True AMCG00003942
AMCG00003929 mRNA downstream 151622 25660330 ~ 25696539 (-) True AMCG00003929
AMCG00003928 mRNA downstream 256674 25580771 ~ 25591487 (-) True AMCG00003928
AMCG00003927 mRNA downstream 289813 25553538 ~ 25558348 (-) True AMCG00003927
AMCG00003920 mRNA downstream 1103971 24713229 ~ 24744190 (-) True AMCG00003920
AMCG00003941 mRNA upstream 22758 25874147 ~ 25884138 (-) True AMCG00003941
AMCG00003946 mRNA upstream 114031 25965420 ~ 25998628 (-) True AMCG00003946
AMCG00003945 mRNA upstream 155461 26006850 ~ 26015600 (-) True AMCG00003945
AMCG00003952 mRNA upstream 235358 26086747 ~ 26117524 (-) True AMCG00003952
AMCG00003951 mRNA upstream 304154 26155543 ~ 26214675 (-) True AMCG00003951
TU5211 other downstream 1552385 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 1552385 24288131 ~ 24295776 (-) False AMCG00003909
TU5013 other downstream 2314279 23529519 ~ 23533882 (-) False AMCG00003893
TU5513 other upstream 46545 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 1013765 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 6458091 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6556413 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6742238 32593627 ~ 32596407 (-) True G5566

Expression Profile