RNA id: AMCG00003941


Basic Information

Item Value
RNA id AMCG00003941
length 1272
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00003941
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25874147 ~ 25884138 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATTCTGATTGTAGCTACAGCTATGACTTGAGCCGCTCTCTGCAGTACAACCTGACTCTTCTGAAGATGACTTGTGATATGGTGAAGACTGAGGAGGTCTCCACCCAGAGTCGACAGGACAGCTTTGACATCTTTGAGGATGAAGGCTTGCCTACACAAGTTGTTTTTGGGGTCAGGAATGAACCATATGCAAAATATGTGTGGAACGGACAGCTTCTGGAGAAGATCAAAGACACTGTGCATCCAGACTGGTTAATGTACATCATCCATGGCTTCTGTGGCCAGTCAAAGCTGCTGATCTATGGGCGACCAGTGTATGTCACCCTGATTGCCAGGAGGTCGAGTAAATTTGCAGGAACACGTTTCCTGAAGAGAGGAGCCAACTGTGAGGGGGATGTAGCTAATGAGGTGGAAACCGAGCAAATAATCCACGATGCCTCGGTTATGTCCTTTACAGCTGGGAGTTACTCCTCCTATGTACAAGTTAGGGGGAGTGTCCCTCTATATTGGTCTCAGGATATCTCCACCATGTTGCCCAAACCACCCATTCGATTGGACCAGGCAGACCCCTATGCCCATGTTGCTGCTCTTCACTTTGACCAGATGTTCCAGAGATTTGGCTCCCCTATTATCATTCTCAATCTAGTGAAGAAGCGGGAGAAGAGGAAGCATGAAAAGATCTTGAGTGAGGAGCTCTTTCCAGCTGTCCTAAACCTCAACCAGTTCCTGCCCCCAGAGCACTGCATTGATTACATTGCCTGGGACATGGCTAGATACACAAAGAGCAAACTGTGTAATGTATTGGACCGACTCAACTTAATCGCAGAGAACGTTGTCAAGAGAACGGGATTCTTTGTAAATCGCCCAGATTTCTACTGCCATACCTTACGGCCTGATGAAAGGcgaATATCCATGTACAACAGTGAACCTTTCCTTTCTGATCTTTTGGAACAGACTGGTGTGCTCCGGACAAACTGTGTGGACTGTTTGGATCGCACCAACACAGCCCAGTTTATGGTTGGAAAATGTGCTTTAGCCTATCAGCTATATGCTTTGGGCATGATTGACAAGCCAAAATTACAGTTTGATACGGACTGCGTCAGGCTGTTTGAGGAACTCTATGAAGACCATGGGGACACACTGTCTCTGCAGTATGGAGGCTCTCAACTTGTCCACCGGGTGAAGACCTACAGAAAGATTGCTCCCTGGACACAGCACTCCAAGGACATCATGCAGACTCTCTCCAGATATTACAGCAATGCCTTCTCA

Function

GO: NA

KEGG:

id description
K22913 FIG4; phosphatidylinositol 3,5-bisphosphate 5-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5435 lncRNA downstream 406714 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 805905 25063554 ~ 25068242 (-) True G4415
TU5352 lncRNA downstream 992538 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA downstream 1000261 24868711 ~ 24873886 (-) True G4397
TU5304 lncRNA downstream 1238652 24635290 ~ 24635495 (-) True G4353
TU5572 lncRNA upstream 113297 25997435 ~ 25998628 (-) False AMCG00003946
TU5621 lncRNA upstream 393306 26277444 ~ 26279767 (-) True G4602
TU5651 lncRNA upstream 475719 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA upstream 476278 26360416 ~ 26365069 (-) False G4624
TU5695 lncRNA upstream 649742 26533880 ~ 26586892 (-) False G4660
AMCG00003940 mRNA downstream 22758 25848161 ~ 25851389 (-) True AMCG00003940
AMCG00003942 mRNA downstream 55172 25811320 ~ 25818975 (-) True AMCG00003942
AMCG00003929 mRNA downstream 177608 25660330 ~ 25696539 (-) True AMCG00003929
AMCG00003928 mRNA downstream 282660 25580771 ~ 25591487 (-) True AMCG00003928
AMCG00003927 mRNA downstream 315799 25553538 ~ 25558348 (-) True AMCG00003927
AMCG00003946 mRNA upstream 81282 25965420 ~ 25998628 (-) True AMCG00003946
AMCG00003945 mRNA upstream 122712 26006850 ~ 26015600 (-) True AMCG00003945
AMCG00003952 mRNA upstream 202609 26086747 ~ 26117524 (-) True AMCG00003952
AMCG00003951 mRNA upstream 271405 26155543 ~ 26214675 (-) True AMCG00003951
AMCG00003950 mRNA upstream 341328 26225466 ~ 26257039 (-) True AMCG00003950
TU5211 other downstream 1578371 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 1578371 24288131 ~ 24295776 (-) False AMCG00003909
TU5013 other downstream 2340265 23529519 ~ 23533882 (-) False AMCG00003893
TU5513 other upstream 13796 25897934 ~ 25901612 (-) True G4521
TU5805 other upstream 981016 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 6425342 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6523664 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6709489 32593627 ~ 32596407 (-) True G5566

Expression Profile