RNA id: AMCG00003944


Basic Information

Item Value
RNA id AMCG00003944
length 4083
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00003944
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25946643 ~ 25965249 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGGGTTGTGACGCGTTATCTCAGGCATGCAATAGGTTAAATAGTGCAGGCAGGcctgcaggcaggcaggcaggcaacTCCGGCACCTATCTCTCCTCCCTCTGCAATGAGTCAGGGAAGTGCCACATGACCTGTATAGCAGGAAGTACAGCCACAGAAAACCCGTATACAGCACAGGCAGATTGTAGCTGCTTTCTCTCTCACGCACACTCTTCTTTCCCACCACTATATCGTTCAATTCAAGTATTTGTGTTTGTCGGGTAAGTTTAAGACATTGCAGAATGTACTGGAGACTGCTGTGTGTAACATTCATCCTGGCTGTCCTGCGCAGTACAACAGCACAAGGGAAGATAGGACACCACGAGAAGCAAATCAAAAACGGTAATGGCACTTTCTTAAATGCCTCCTGTGTCAACGACACTTTTATCCCTACAAAAGAGTGCCTGCTTACGAATGAATCGGCTTGTGCGGCTCCAGCGAATACAAGTACACCAGTCACCCCCACCACGTCACACAATGCCACCATCACTCCTACAAAttctactacaactactacagCAGTTTCTCCCACTGCAGTCCCTCACAAGAAGTCCTCTTTCGACGCGGCCAGTTTCATCGGGGGCATCGTACTGGTGTTGGGACTGCAGGCCGTCATCTTCTTCCTGTACAAGTTCTGCAAATCCAAGGATAGGAACTACCACACCCTCTAAGATTATCCTCCCTAGACAATAGAACAGCGGTCACTCCAGGCCATGGGCTGACATTGCCCTTCCCAGAGACCCCAGTCCTTTCAAACAGTGTTTCCAggcagtgtctgtgttttccAGCTCAGCACGAGCAGCCTGTGAGTCCTGCATTACCTCTGAAGTAGCTCATAATGCAACCATGTTGACACCATTGATTACTAGCTAGCACTGTTCTTAGTGAGGCTTTTAGACATCTGTACCAACAAAGGTAATGCTAGAGTTATGGTGTTACAGGCTGCTTACTTTTCTGTTGCTTTAGGAACACTGTTtgaaactggatttttttttttattattcttttattaataatgattaagCCCCCCTTTAAAAGTATGGAAGATACAGCATTGCTTTTCAGGCTTCTGCTAcagtaaagaaaattaatatgcAACTTTTGGGGGGGAGCTAACTGACAAATTTGAAATTCGAAGGTGAAAAGCAATACTTTACTTTCACTCTCGCTAAAAGAGAGAACTATTCCAATTAAAAGCAACATCATTACAAGATGAATAGGCCTTTATGTATGCTAACTGAAAAAGACCAGACAAAGACAGTTGAGGTCATCTCTTGCGGTCTTGGAAGTGGATGCATTCCAACGTAAGTAAAGTAAATCTAAGGTGTGCAGGGCTGAGTTTTTTTGGGGTGTGTTTGCGCATGCTGTTTATCTGCCAGAGAAGGAGATATTGTGGTAATGGTGAAGAACAATCCATGGAAAAACTCAGTTTTGCAATGAAGCAtggctgcatttttttttttctcatttgttttatcGTAGAATGGTACTGGCCTGCAATCGTGATCTCTGTGCCGCACCGTGAAGATCGATCCGCTTTACAGTACAAATTAAGTAACTGAATTCTCAAATGCACGGATTAATTGTTGGTAGTTGTTAATTATCTTTTTGAGGAGAATATTTGGGGGTTTTCTGTGAATGTGTGCCGAGAACTAAATTTTAGCTTTAGAGGAGTATgtctgaaacaattaaaaaagaaaaagtcataCACCTTTTCAACATTGATGGCAGTGGAGTGGAGAAAAGTGCCTTATGAATGTGCCAATCAGGCGAGTAATACATGGAAGACCCCCTGACCCCTGATTTAAACTGTATCCCTGTGATTCTGTGTTTAGGGGTGGGAGGGCAGGTTATCATTGTCAATactattcttattattcttatcaAATGCAGTGGTGCTGCcagcttgacttttttttttttaaacatacaataacatatttatttcagtagtgCCCAAGTACTCTGCACAGAAAGGGGATTTTACCCAGACGTATTAATATCCCCTCcccaattaataataatctgcaaCTTTTCTTTTGTAAGTTCCTTGTTTGAAAAATGAAGCGTCACTAATGGAGTGTCTATATTTGATATTCCAGCTTTTCCCCATCATGTTGACAGTTATTCTTCAGTTATACAACTGAACATGGTTCCTATGTTGACAAATACAGAAAGCAGCCTTTTTCTTCCTCAAAACGTTCTTGATTTTTATGTAACCTTTAAAATTGGACTTCTAGAAATGAATGTAGGGGGAtccctttttaatttgaagaatCACTTGCTGAAATGAATGTTAGGTACGCAGCACATACATTTAGAATAGTGGTTTGAAGCCTGAGTTTTGTTAAGTCGAATGCTTTCTGTTCACTAGATATTGCTGATTTTCGATccttttttatgttgtgtttcaaaCCGTCTCAGAATGGAAATTTGACAAATTTAATCGTTAATTAGATAAATTTAGGATATGTTGAATAGGTTGTCAATAGTTTGCACCTATGCACTCCTTATAGTATTGAGACAATCTGCTCAGGTTTTCTGCAAATGAGCACGTTAATGTTTTTGAATTGTAATTATGTGAGTATTCAGTTGCAGATGTTCTCTGGACTCCTACCTATACATTTAGTAAACcagtttgttttacaaaaaattatgatgtacattaaaatacaaaaaaaataaactggttaTGGCTAAGCATGAGATTTGATGCATTGAACTGACCAAGCTTTGCTTTTTTCtcccaaaaatgtattatgtaggccttttttttttttttttttaatcgctTTACTTGTAATGCAGATTTATTTGCcagataataaaaatgttaaaaatgttttaaaaattatgaaaactgAATGCATGGCCCGTGTCTGCCAATATTGACCAAATGTTTGTTCATTGTAGACCCTTGTCTAAAGACCTTTAAAATGACTCGAGCAATATGAGAGCAGCATTAGGCTAAGTCCAAAGAGTTTGAATCTTCATGGCAAGATACTATAGCACAAAACGTGATCTAGGAAAATGCTGGCTTAGCTGCTCCCGTGTGTGTCTGTTGCCCTCTGTGTTTTGTAGATTCCTGTTGAGAATGGTTTGGCTCATGGTTGTAGAAGTAGTTCCATCATAGATATTGCAGATGCTTCACAAGTGTGTCAAAATGCTCTTGTAATTATGCCAAGTACATACCAGATATTGCCTTGTTTCCATTTGTCCTTGATAAGGTTTTAGAAACGCCAGCTCTGGAGAAAGTGTATCTTGTGATTTCTGAGTAATCAGGACCAGTCTTGTCCACCAACATTACACAATTATCGGTGTAGCCCTAGTACCATTTTCTTTGGAGGAATCCTGCAAGTTTTGTAATCggtgtggaaaatgtatttgcctTCACTGGCGGGCACTCCAGAACATATGTGCCCCATGGCTGTTATTAGTTAAGACTTCCATAGTAGCAGGCCAAAAGAAAGTATTAATTTCTGCAGAATTCATGTACTGGGTGGTGCCAATGTATTCTCTATACCTGTAAGCTTAAGGTAGAATGTCACACTGCATGGAACAAAGCCCTTATTGTAAAGTGCCTTAATTAGCTCTGCTTTTAGTGGCTAAAAAAAGAcatccatcttttttttttaaatcaataatctcaagtttgtataaaatgtttggCTTGCAATGCACTGCACCTGTTCTTTCAGTGTCTGAAGGAGCCCAGCAAGCATGGTAGTTGGATGGGTTATTCCCATAGGTCAAAGTGTTGAAACTTAATTTCTAAAATTGTTGTGCGTGTGtttcttgccttttttttttttttttttggtggtcaTATCAAGCTAAAGGGTATTCATTGGTTGAATTGCCTGCTGTGCCCTGAACCCCACACTTGTCCAGATGTAGACACTTGCTGTTGCATATGTAGCCACAAAGCCTGCCTTAATAAAGTTTGATGCTTTTTAAGTATACTTTTTTTAGGTGTCTTGTTTTTCTCACGTGCAAAGTTTAAGTTgtgaaaaattaataaaatttgGGAATTTGAACAAAA

Function

GO: NA

KEGG:

id description
K06546 CD164, MGC24; CD164 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5542 lncRNA upstream 2291 25944143 ~ 25944352 (+) True G4536
TU5526 lncRNA upstream 16963 25929467 ~ 25929680 (+) True G4526
TU5503 lncRNA upstream 58330 25814291 ~ 25888313 (+) True G4512
TU5466 lncRNA upstream 336347 25610078 ~ 25610296 (+) True G4482
TU5432 lncRNA upstream 392554 25481598 ~ 25554089 (+) True G4452
TU5581 lncRNA downstream 118080 26083329 ~ 26085122 (+) True AMCG00003948
TU5608 lncRNA downstream 260244 26225493 ~ 26227500 (+) True G4589
TU5609 lncRNA downstream 263679 26228928 ~ 26229252 (+) True G4590
TU5611 lncRNA downstream 278413 26243662 ~ 26244054 (+) True G4592
TU5612 lncRNA downstream 278998 26244247 ~ 26244637 (+) True G4593
AMCG00003943 mRNA upstream 3596 25939882 ~ 25943047 (+) True AMCG00003943
AMCG00003937 mRNA upstream 8314 25933027 ~ 25938329 (+) True AMCG00003937
AMCG00003938 mRNA upstream 19504 25915420 ~ 25927139 (+) True AMCG00003938
AMCG00003939 mRNA upstream 31618 25904385 ~ 25915025 (+) True AMCG00003939
AMCG00003930 mRNA upstream 150848 25785173 ~ 25795795 (+) True AMCG00003930
AMCG00003947 mRNA downstream 54295 26019544 ~ 26019825 (+) True AMCG00003947
AMCG00003948 mRNA downstream 116034 26081283 ~ 26083886 (+) False AMCG00003948
AMCG00003954 mRNA downstream 292177 26257426 ~ 26257668 (+) True AMCG00003954
AMCG00003949 mRNA downstream 307170 26272419 ~ 26279485 (+) True AMCG00003949
AMCG00003956 mRNA downstream 354518 26319767 ~ 26328027 (+) True AMCG00003956
TU5497 other upstream 150852 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1262723 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2233509 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4022856 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4186013 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 2097114 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 2097425 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4305961 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4922746 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 7164871 33130120 ~ 33131186 (+) True G5642

Expression Profile