RNA id: AMCG00003945


Basic Information

Item Value
RNA id AMCG00003945
length 1836
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00003945
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26006850 ~ 26015600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCTGTGAGAGGGGCGGCAAAGGAGGAGGGAAATTTAAACTGCTAACGCCATCCAGAGAGGACGACCGGGATACCAAACCGAAACCTTGCAGTTGGGAGGAAATACCCCAAAACCAAGCAAACATAGAGATACAGATATTATAAGATCAACTATGGAGCCGTTTCAACAGCAGaaCATAAGTGTTGGATCTCCTTCTAAACACAGTTACTTGGGGAGTTTCTATCTCCCCCCAGAGAAAATGCCAGCTCCTTTGTTTGTCTACCACAAACCACCACCCGCCATCATGGCAGACAGTAGTGGCAGACTCATGAAGCTGAATCCTGAAACGGATGAAGGAAAAACTGAAGCCAGCAGTAAAGCTGTGATCTCGGCGCTGAAGACGCTGCAGGAGAAGATTCGCCGCTTGGAGCTGGAGAGACTTGTGGCTAATTTGCGCTCGGCCGAAGCCCGCTGCTCCCTCCTGGAAAAGCAGCTGGATTACATGAGAAGGATGGTGGAAAATGCAGAGACTGACAAGAATGCCATTCTAGAGAAACAGGTTTCTCTTCACCGGGAAAGAATCAAAGACCAGGCTGATGTCCATACTAAGTTAGAAAAGCTGGAAAAGTTAGAGGAGGAGTGTCTCAAACTAACGAGCACTCAGTCAATTGCTGAGAGAAAGATCCATCAGCTGGAGCAGAAGCTTCTGGAAGAGGAACACCAGCGCAAGCTAATACAAGAAAAAGCTGCCCAGcTTCAGTCAGGTCTTGAAAAGAATCAAATTCCTATTTCTTCACTCTCATCTGGAAGCAAACcaaagaagaagatgaagaaaccTGTGAGGAAAATTGCGCTGGCAAGGAGTGAAGATCCAGCTCCTCCATTTTTCCCAAGGTCAAAGCACCTTCCCTTCGTGGCTGGAACGTCCACCAGTCCCAGTCACTCGGTGAGGGCGAACGTGCAGAATGTCCTGCACATGATGAAGCACCACAACCCCCAACTCTGCCACCAAGGCCAAGACCTTCACGTTCAGCCCCCGAAGACAACACATCCCGAGAACAGACGGGGTATCCAGAGGTCTGCGTCGGCCAGCTCCAGCGCCTCCTCAGTGGGCAGCCTGTCAGAACTGCTGCTGGCATTGCAGGACGAGCTGGGACAAATGAGCTTTGAGCACCAGGAGCTGGTGAAGCAGATCCAGGAGACGGAGAGACTGGCAGTGCGGGAGGATCTGGAGCGAGAGCTGGACTGCCTGGTGAAGCGCATGGAGGCAAAGGGGGAGCAGATCTCCAAACTGAAGAAACACCAAGCAGCTGTACAGAAATTGAACCAGAAATCACGGATGCCAAAGAGGCGAACATCCAGCATTGAGCCCAGGACAGGAGGGCTGAGTGGAGTCAGGCCATTGCCCCCCTCTCCCCAGAGTAGAGGGAGCCCCAGTAAGGCCGCTCAGGGAGCGAAGGGCCAGGACAGCCTGCGGCTCCTGAAGAAAGTGCAGAAACTGCAGCTGCACCTGAAGAAGGATGACATCATGTGGGAGCAGTAGCGCACGAGCCTCCCGCACAGCGGAGACCAGAAATGGTCCTGCTCCCCGTCTGTCACACATCCTGTGCAGTAATGATTCTTTCTGTGCGCTAAACTTGAAATTCTGTTGAGTTCAAGACTAGgactgttgtttttgtcttgaggcctgaaattgttttattttcatgtgtatatatacagaatatagtATAATAGACTTAATTTTATATCTgcttgtaatttaaatgtaatgccttctctttttttcaataaaaagttTGCAATCTGTTAATTGCAGCCATTAATGAGGTCTGattcactaaataaataaagg

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0009987 cellular process biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04218 Cellular senescence
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5572 lncRNA downstream 8222 25997435 ~ 25998628 (-) False AMCG00003946
TU5435 lncRNA downstream 539417 25466252 ~ 25467433 (-) True G4455
TU5390 lncRNA downstream 938608 25063554 ~ 25068242 (-) True G4415
TU5352 lncRNA downstream 1125241 24820841 ~ 24881609 (-) True G4390
TU5361 lncRNA downstream 1132964 24868711 ~ 24873886 (-) True G4397
TU5621 lncRNA upstream 261844 26277444 ~ 26279767 (-) True G4602
TU5651 lncRNA upstream 344257 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA upstream 344816 26360416 ~ 26365069 (-) False G4624
TU5695 lncRNA upstream 518280 26533880 ~ 26586892 (-) False G4660
TU5701 lncRNA upstream 543269 26558869 ~ 26561251 (-) True G4665
AMCG00003946 mRNA downstream 8222 25965420 ~ 25998628 (-) True AMCG00003946
AMCG00003941 mRNA downstream 122712 25874147 ~ 25884138 (-) True AMCG00003941
AMCG00003940 mRNA downstream 155461 25848161 ~ 25851389 (-) True AMCG00003940
AMCG00003942 mRNA downstream 187875 25811320 ~ 25818975 (-) True AMCG00003942
AMCG00003929 mRNA downstream 310311 25660330 ~ 25696539 (-) True AMCG00003929
AMCG00003952 mRNA upstream 71147 26086747 ~ 26117524 (-) True AMCG00003952
AMCG00003951 mRNA upstream 139943 26155543 ~ 26214675 (-) True AMCG00003951
AMCG00003950 mRNA upstream 209866 26225466 ~ 26257039 (-) True AMCG00003950
AMCG00003953 mRNA upstream 265936 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003960 mRNA upstream 409739 26425339 ~ 26446838 (-) True AMCG00003960
TU5513 other downstream 105238 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 1711074 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 1711074 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 2472968 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 849554 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 6293880 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 6392202 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6578027 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 8116498 34132098 ~ 34135600 (-) True G5801

Expression Profile