RNA id: TU5581


Basic Information

Item Value
RNA id TU5581
length 1470
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00003948
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26081283 ~ 26085122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGGTATGACGATTATGACTATGGAGAAATTAACCAGCTGTTGGATCGCAGCTTTAAGGTCTATATCAAGACTGTGGTGTGCAGTCCAGAGAAGACCACAAAGAGAATGTATGACAGCTTCTGGAGGCAGTTTCAGCACTCTGAGAAGGTACATGTGAATTTGCTTCTAATGGAAGCTCGAATGCAGGCGGAACTGCTCTATGCTCTGAGAGCCATTACTCGCTACATGACATGAAGTGCTTTGTTCTGTTCCTTGTGTGGacatttcaaaggaaactgAATGTTGAATAGATCTTCATGATGGATGTGGACAGTCCTCTGAATGGAGAGCTGACTAACTGGCTGCTGTGAATCCGTTGTGCCATAAACGTGCGGTGGTGCATCTATGCTAATACTTGGCTGTGAGGCAATCCGAAGATGAGGATAGAAGACTGTGAAGAAGAAGCCAAACTTCAGTATTCCATTGCATCCGCTTTAATGTCGCTGAACGACGTGAAACATTTTAACAGCGTTCGCAGCGGTGCACTGAGCTGCACACATTATTTagatttcattgttttgtattaaagctGACATTTGAAATGACTGGAGGTAAACGAAATGAAACTAAACCATTTCCTGATGAAGTTGTTGGGCTGTATAATGTGTGCCTGAAACCAGTAGATGTTGAAAGTGGCGTTGCTGCTCTTCACACCAGTGGGATCTTTTAACCAGCTGGTTGTTCGTGTAAGCTAAAACAAGGGTGATGGAGAAACACGGTGACTCTCTGAGCCCACCTGTGTTCCCCCCTTGACACCTCTACACATTGTGAATTGGTATTTCCTTtaacactttgcatttgacACCATCACCCGTCGAGGCACTTTTTAAGGATAAGACTGTTTTTACTGCTGTATTCTAATTGTTTTGAGGAAGCTTTGTATTTTCTCCATCAGTCAATATCACAGTCTTCCCTAGAGAAGTGCGCCTGTAATTCCCCCTCCAAGTCTTCCATAGACTGTCACCTAACAAAATCATTTTGCATTGGAATTTGAATACCTCTTAAGTGCTCTTTTTGGGCAGAAATACTGTTTTGCACCTGTTCTCCTTTTATGCTTCTGCTTGTCTGTGTCAGTGGCGGAGCTGAAAGGAGGGTGGCTTTATTTTTGACTGCACTGCTGCAGTCTCTGAGATGCTAGTTCTTACTGTTGATTTGAACTTAACCATTTAGCAGCTTTTATGGTGAAGTGGAGAATCCCATTTTGTGTACTTAAAACGTAAAGTACTTGATCAAGAAACAGAAACCGAATTGGACATATTACAACTGTGGGTTGAGGGGTACACTTTCAAAATGCCTGTAATTATAAATCGCAAGGTATTTCCTAAACCTTTGACGCGTATGAATATCAGTGTTACTTGCattttcatgaaaaataaaatgttttcataatagTAAGCTGAAGGACCATTGGTGTTGTACAACAGACTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5542 lncRNA upstream 138977 25944143 ~ 25944352 (+) True G4536
TU5526 lncRNA upstream 153649 25929467 ~ 25929680 (+) True G4526
TU5503 lncRNA upstream 195016 25814291 ~ 25888313 (+) True G4512
TU5466 lncRNA upstream 473033 25610078 ~ 25610296 (+) True G4482
TU5432 lncRNA upstream 529240 25481598 ~ 25554089 (+) True G4452
TU5608 lncRNA downstream 140371 26225493 ~ 26227500 (+) True G4589
TU5609 lncRNA downstream 143806 26228928 ~ 26229252 (+) True G4590
TU5611 lncRNA downstream 158540 26243662 ~ 26244054 (+) True G4592
TU5612 lncRNA downstream 159125 26244247 ~ 26244637 (+) True G4593
TU5613 lncRNA downstream 170667 26255789 ~ 26256106 (+) True G4594
AMCG00003947 mRNA upstream 63504 26019544 ~ 26019825 (+) True AMCG00003947
AMCG00003944 mRNA upstream 118080 25946643 ~ 25965249 (+) True AMCG00003944
AMCG00003943 mRNA upstream 140282 25939882 ~ 25943047 (+) True AMCG00003943
AMCG00003937 mRNA upstream 145000 25933027 ~ 25938329 (+) True AMCG00003937
AMCG00003938 mRNA upstream 156190 25915420 ~ 25927139 (+) True AMCG00003938
AMCG00003954 mRNA downstream 172304 26257426 ~ 26257668 (+) True AMCG00003954
AMCG00003949 mRNA downstream 187297 26272419 ~ 26279485 (+) True AMCG00003949
AMCG00003956 mRNA downstream 234645 26319767 ~ 26328027 (+) True AMCG00003956
AMCG00003955 mRNA downstream 249511 26334633 ~ 26339261 (+) True AMCG00003955
AMCG00003958 mRNA downstream 254726 26339848 ~ 26365099 (+) True AMCG00003958
TU5497 other upstream 287538 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1399409 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2370195 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4159542 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4322699 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 1977241 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 1977552 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4186088 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4802873 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 7044998 33130120 ~ 33131186 (+) True G5642

Expression Profile