RNA id: AMCG00003961


Basic Information

Item Value
RNA id AMCG00003961
length 1790
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00003961
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26576136 ~ 26581454 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCTGGCCGCGGTGTGATTGGCGTGTGTGGCGCTTGTCTTGTCTGCTCTCGTTGTCTGCGGGCGAGCGAGGTGGAAGCGCAGAGCGGCGGAGACACGTACAGggCTGGCCATGAGGGGGTTGTTGCAGGTGCAGACCCTCAGGAAGCTGTCAGTGCTGTCCTCACTCTGGGAGGGGACTTTGTGGCATTTTCTACCCAGGACAAGATGGAGCCACAGGACAGTATATACACACCAGATCTCAAGCTCAAGATCTCCACCcgttttgggaaaaaaaagtatcccCCCCTTTGAATGTCATCCTCCGAGTTTGTTGCTGCTCCTAGTGAGGTTCAAAGGCAGCAAGAGCTCCAAAATGCGAGGGAAAAAGACTCAGCacgatgaggaggaggaggtggacgATGACCCAGAGAACAGTGACCATGAGGAAGAGCTTCAGGACGACGATGGGCTGCCCAAGGACTACAAGGACCTGGAGAAGGCAGTGCAGTCCTTTCGCTATGACCTCGTCCTGAAGTCTGGATTGGATGTGGCGCGCAACAAAATTGAAGATGCTTTCTACAATAACAAGCTGAGGCTCAATGGACaaaagcttattaaaaaaagcaaaacagtgAAGGTAGGCGATACACTGGATCTTGTTGTTGGAGAAGACAAAGATACAAACACTGTCACAGTTATGAGAGTCATTTTCAAGAAGATAGCAGGAGAAACCAAAGACGCTGAAAAATATAAGGTTGTGTTAAGGCGCTGGAAACACCTAACACTTCCTAAGGATGAGGCCTACAAGAATTAGAGGTAATATAGTTATGTGAAGGTGCTGAAAATGGTGTCATTAGACTTGCCAAGAAAAAAAGATCTCTTGTGATTTTTTGGATTCACAAAGATGTGCTTATGGATTTtggggaaggagaaaaaatagCACAGATTGCAAAGCTATGAATGAATTGCTGGCCATATTACAAAGTTTACCTGCTGGAGTATGTGCTAAATGAATGAgttttttaatagaaatgttTGGAAATAACACCTGTATCCTCTATTTATGTACAAAACTTGTCATCTGTGTAAAGAGTAAAATTATTTAAGTAATTGgcaattcattcattcatgttatGTTCaagatacaaatatttaaacattgttattCATATGTGTATACAGTACACTGAGCATGGATGCACAAATAGTACAATTTCTGCTGTTCAACAGAGATGATGATACATCAGTACaacatcatttgtttttcacttgtttttctgtgtatgtgAATATTGAGGTATGCTTCAACAAACCAGTTatatttgagaagaaaaaagtaactCTTGTGAAGTGATAGTTCATATTGAATACCAAACCAAGGATGCAGTTGATTTACTCATCCTGAAGATATCTCATAAAAGTGTTTGTATTGACGTACAAACATGTAGATTTAAGAGAAATGTAGTATTGATGTCTTGCAGTATGgcacttctttatttttatttgtattatgagaCTGCACTCTAATTGGAGGAACTCATTACAATTAACTTGGTGAAACTGACATCACATTGGAGCATATGAGGATCAACCTTTTGTGCCATTCTCTCAGTTATGCATGTGTTGCAATGGGAAATGAAAGGAATACATAtagaactgtattttattagtttcactgttataatacattgaatatgCTGTATTCATACAAGGCTGGTATCATTTGACATCGTGGGAATGGAATATTGGTGAAGGTTTTTATGtattctataaaaaaatatatatttatcaacatgttttctgtttttt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5701 lncRNA downstream 14885 26558869 ~ 26561251 (-) True G4665
TU5651 lncRNA downstream 211067 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA downstream 211067 26360416 ~ 26365069 (-) False G4624
TU5621 lncRNA downstream 296369 26277444 ~ 26279767 (-) True G4602
TU5572 lncRNA downstream 577508 25997435 ~ 25998628 (-) False AMCG00003946
TU5694 lncRNA upstream 4032 26585486 ~ 26586892 (-) True G4660
TU5778 lncRNA upstream 176897 26758351 ~ 26758880 (-) True G4727
TU5803 lncRNA upstream 209704 26791158 ~ 26832411 (-) True G4752
TU5838 lncRNA upstream 383306 26964760 ~ 26965399 (-) True G4782
TU5894 lncRNA upstream 1468085 28049539 ~ 28058411 (-) True G4829
AMCG00003960 mRNA downstream 129298 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003953 mRNA downstream 286732 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003950 mRNA downstream 319097 26225466 ~ 26257039 (-) True AMCG00003950
AMCG00003951 mRNA downstream 361461 26155543 ~ 26214675 (-) True AMCG00003951
AMCG00003952 mRNA downstream 458612 26086747 ~ 26117524 (-) True AMCG00003952
AMCG00003965 mRNA upstream 43186 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003966 mRNA upstream 70452 26651906 ~ 26683835 (-) True AMCG00003966
AMCG00003968 mRNA upstream 189840 26771294 ~ 26771916 (-) True AMCG00003968
AMCG00003967 mRNA upstream 248900 26830354 ~ 26866943 (-) True AMCG00003967
AMCG00003970 mRNA upstream 358584 26940038 ~ 26957628 (-) True AMCG00003970
TU5513 other downstream 674524 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2280360 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2280360 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 3042254 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 283700 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 5728026 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 5826348 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 6012173 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7550644 34132098 ~ 34135600 (-) True G5801

Expression Profile