RNA id: AMCG00003965


Basic Information

Item Value
RNA id AMCG00003965
length 1937
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00003965
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26624640 ~ 26633703 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAGGTCTCCTTAGCACTCCGTGAAGGTAAAATAAGTCCCAAACAGCTTTGCCAAAGGTGTCTGGactttgtaaagaaaacaaggTTCCTCAATGCCTATATCACTGTCACCGAAGACCTGGCGCTGGAACAAGCGGAGAAAGCAGAGAAGAGATTCACCAGAGGTGAGTCTCTGGGGCCCCTGGATGGGATCCCCATTGCAGTGAAGGATAACTTCTCTACCGCTGGCATTGAAACAACGTGTGCCTCTCACATGTTAAGAGGGTATAACCCTCCATTCAATGCAACTGTAGTTCAGAAGCTGTTGGACCAAGGTGCTGTTCTTATTGGCAAAACAAACTTAGATGAATTTGCAATGGGGTCTGCAAGCATAGACGGTGTGTTTGGGCCAGTGAGGAATCCCTGGGGTTACTCCACACAGTACAGAGACAAGTGCGCACAGACCTCTGGAGGCAGGAACCCAGACTCTGACTGGGTCATAACAGGGGGAAGTTCTGGTGGCAGTGCGACTGCTGTGGCCTCATTAACATGCTTTGCGTCCCTTGGCTCAGATACGGGAGGCTCTACGAGAAACCCTGCAGCCCATTGCGGCATCGTTGGCTTGAAACCTACATATGGTCTCCTGTCTCGCCATGGTCTTATCCCGCTTGTGAACTCCATGGATGTACCAGGCATACTAACTAGAAGTGTGGACGATGCTGCTATAGTTCTAGATATTCTTCAAGGTTACGATGCCAAAGACTCGACCACAGTACAGGGTCCGGTCACACAGATAAACCTACCTGCTGATATTGATCTCAAAAATATATGCGTTGGTATTCCAAAGGAATATCATGCCCCCGGCCTGTCCGGTGAGACGCTGTCCCAGTGGAGCAGAGCAGCAGAGCTCTTTGCGCAGGCAGGGGCTCAGGTGGTGTCCGTGTCCCTCCCTCACACCCAGCACTCCATTGTGTGCTACTCTGTGCTGTGCGCCGCTGAGGTGGCATCCAACATGGCACGGTTTGATGGGCTGGAGTATGGTCACTGCAGCAAAATCAACAGCTCAACCGAAGCGATGTTTGCCTCCACCAGGCATGAAGGGTTTAATGATGTCGTGAGAGGCAGAATTCTGTGTGGAAACTACTTCCTGTTAAAAAAGAATTACGATCAGTACTTTGTAAAGGCACAGAAGGTTAGACGCCTTATAGCGAATGACTTTGCCAAAGTGTTCGACTCAGGGGTGGACGTGCTGCTGACCCCCGTCACGCTGTCAGATGCGGCACGCTACACTGACTTTGTCCAAGAAGACAGCAGGACCCGCAGTGCACAAGAGGACATCTTCACACAACCTATTAATATGGCAGGCCTTCCAGCTGTGAGTGTCCCTGTCGCACTGTCAAGTAAAAGTCTTCCTATCAGCCTGCAGTTGATTGGCCAGGCTTTTCAAGACCAGAAACTTCTCACTGTCGCCAGGTGGTTGGAGCAGCAAGTGAAATTTCCAGCAATTGAGTTCCCACACATGAATGATCATCTCATGGAAGTTcctacaatgaatacatcagcCATAGCTGTTTGAAACCCTTAATTTGTATTGAAGGTCAAATCAGCCTGGATAGGATTTGGCAAATTATGGAGATATCAAACTTCCTGTTATTATAAGATATCTGGACATGGTTTGGAGAAAATGCAAATAACTACAAGTTCCTTTGGAGGAAGGTTAAGAGCTGGCTActcattaaataatgtttaaaatacagaccTCTGAGTAAGTGGTAGTAGGGACCAtgtttaaaaactgtattttcagTAGGGCAACAAGGGTCTTTCATCAACAGGAAAGTTAATTGCAAAGGGGGCATGCTGCtgaaaaatgtctttctttaaaACCTCTTCAATTCCATAATTAATAAAGAGATTTATACAAAccattttttgttataaagGTACTGAAGAAAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function

KEGG:

id description
K02433 gatA, QRSL1; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5695 lncRNA downstream 37748 26533880 ~ 26586892 (-) False G4660
TU5694 lncRNA downstream 37748 26585486 ~ 26586892 (-) True G4660
TU5701 lncRNA downstream 63389 26558869 ~ 26561251 (-) True G4665
TU5651 lncRNA downstream 259571 26359857 ~ 26365069 (-) True G4624
TU5652 lncRNA downstream 259571 26360416 ~ 26365069 (-) False G4624
TU5778 lncRNA upstream 124648 26758351 ~ 26758880 (-) True G4727
TU5803 lncRNA upstream 157455 26791158 ~ 26832411 (-) True G4752
TU5838 lncRNA upstream 331057 26964760 ~ 26965399 (-) True G4782
TU5894 lncRNA upstream 1415836 28049539 ~ 28058411 (-) True G4829
TU5906 lncRNA upstream 1470906 28104609 ~ 28104980 (-) True G4838
AMCG00003961 mRNA downstream 43186 26576136 ~ 26581454 (-) True AMCG00003961
AMCG00003960 mRNA downstream 177802 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003953 mRNA downstream 335236 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003950 mRNA downstream 367601 26225466 ~ 26257039 (-) True AMCG00003950
AMCG00003951 mRNA downstream 409965 26155543 ~ 26214675 (-) True AMCG00003951
AMCG00003966 mRNA upstream 18203 26651906 ~ 26683835 (-) True AMCG00003966
AMCG00003968 mRNA upstream 137591 26771294 ~ 26771916 (-) True AMCG00003968
AMCG00003967 mRNA upstream 196651 26830354 ~ 26866943 (-) True AMCG00003967
AMCG00003970 mRNA upstream 306335 26940038 ~ 26957628 (-) True AMCG00003970
AMCG00003974 mRNA upstream 332019 26965722 ~ 26968015 (-) True AMCG00003974
TU5513 other downstream 723028 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2328864 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2328864 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 3090758 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 231451 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 5675777 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 5774099 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 5959924 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7498395 34132098 ~ 34135600 (-) True G5801

Expression Profile