RNA id: AMCG00003966


Basic Information

Item Value
RNA id AMCG00003966
length 5847
RNA type mRNA
GC content 0.44
exon number 19
gene id AMCG00003966
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26651906 ~ 26683835 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTCACGCAATTCATTGGAAGAAAAAAGTGGAGTCTTTGAACGACTTGggaattttttttcttctaagaGAAGAAAGAGCAAAGGCTCCACTGAGGGTTTTGATACACCAGCCGAAAATGCAAGTCAATTTTCTGAACAAGCCATTGAGTACAATGAGAAAGAAGAGGTCAAACAACCTTTAAGTGATTCTCATTCTGGGGCTCCCTATATGGCAGAAACGTCTAGGGAAGAAgttgaagaaattaaaatatctttgtCTGATGTGAGGTCAGGAAGACGTTTACCTAGCACCTCAAAAATAGTTGAAGTCTCCACTTACAGCAGTAaagacactacagtacagacagACGACATTCCACGTCCTTCAGAGGTTGTTAGCTATGGAAAAACAACCCTGAGCAGCACACAGGTCTCTGagacgaacacacacacacagaacacagtgCTGGGCGTGAATGAGGAAGAGACTGGGGGGGAAGAGAATGCAAAACATTCTAAAAAGGCAGGAGAAAAGACCAAGAAACTCCATGTGTATGTAGAAGAGACGAGCATAAGCAGGAGCCCTGAGAGCACACACGGGCAAATTATTGAAAAGACACTGAAAAAAAACTTTGAGATTGTGAGCAGAGTTGATGCAGAATGTAAGGAAAGTGCTCAGGCAGAGGAGTCGAATTCACAAGAGCCTTTCAGTACTCAGGAGTCAGAGAGTACATCACAAGCTTTAGTATCTCAAGCTTCCACTGTGCAACATCTTGCAGTCCAGCCAGGTGTAGTCAAAGCAAAGTCGGTGTCTGCCCCATTCACAGATAAAGGTCCGCTACAGCAAGAGATTGACAAGGACACTGAAGTAAAGACTCGAAAAGAAACTACGGTTCTTACTGTAGAGGTGTACCTGAAACCTGAAGACAAAGGGGTCCCTGCAATCTCTGCAGAACCATTACATATAGTGGATACTGAAACCATGGGAAAGAAATCCTTAAATGAAAAGGGCAGGCGCAATTCAGGCCGAAAAAGGCCTCCGAAACCCGGGAACAGCCCGCAACCGTCCGAAGACAAAGCAGAAAGCAGCTCTGACAAGCAAGAAAAGTACGATTTGACAACCGTCACAATCCCTGCCCTGGAAAATAACGACGAGCCTCTGCAGCAGACACCTGAATCGGGGAATAGTGCCTTAAAGCGTCATGAGGCCAGGGCGGAAACTAATTTGAGTGCAACATCAGAAACAAGAAATGCAGAGCAACAGAGCCTGACACGGCCTGTTCATGCATTACCTGTCAGTGCTGAGACTACAGATGCAACAGGAAGCTTAACTGCTCAGTCTGAGATAGGAGCACGTGGCAGTGGGCCAGCTCTGCCTGTATCCACAACAGATGCCTCATGGGTGGGAAAGACAAACAGCGCTGAATGCTGGGAAGTCTGTGGGAGTGCTGCTAGTGCTGCGCGTGCAGAGAGTGGCTCCTCGGAGGAGAAAGCTCTAGACCCTCTCGCAGAATCACCCAGCACTTGGAAAGGTGCTCAGGGTGACAGAGTAGTTTCAAACAAATTGGCTTTGAGCTCTGAATTTGGCCAGGAGGACATAGGGAATGGCGAGAAGAGTGTGAGAAGAGGCGCAGCAGCGGGAGAGGCCAAATGCAAGACCCCTGTGAAATCCGAAGTTAAAGTATTTCCACATCCCAAAAATGTTGAATTAGAATACAAAGAAACTATATCGGAGAAGACTGGCAAAATTTCTGAAAAAATCAGCCTGTTTGAGAAGAAGTCAACAAGCTATGTCAACAAAGATTATCATGTCACAAAGAGCATAAGCTGCTCTGCCAATCCAGCCAAAACATATACTGGAAAAGTGAAGCTGAAAATACAGAAGCCTTCTCATAGTACCATGATGGAAGACAAGAAGATGAATGCTGTTAATGTTGATGACCAGAGTAAAAGTGACTTGGAGGGCTTCATAGAGAATATCAAGAATTGTGGTAGCCCCTTTTCTTTTCCACCTAAAAAGCCCAAAAGTCTCAAAGTGCCATCACCACCATTTGCCATGCCACCCATAAAGGAAGACCGGTTTGAGAAAACTTTCGATCCTGATTTCTTCAAATTCGGATtaggaaaaaaagaaggaagTAAAGACCCAACTCCAGCAATGTCAGTCAAGCTGAAAAGCAGtgaaacaaaaagcaagctGAAACCCATGCGAgccagcacagagcagagcatgCTTTTCAAGACGCTTCAGTCTCCAAGTAAAACGACAATCCCGGAATTTCCCAACACTGCTAGCAAAGAAAAAGAAGTACAAGAGGATGTTGGGAAAGCAAAATCCCGTCTGGAGAGAAGCTCTGTGCTTTCAAGTCTGATGAACTCCTCAAacacttcaaaaacaaatatgacaacAAATAGCACAGCTCTCAGCAATGAGATTTTTCCCAATTCCCAAGCAACATTTCTGCCAGGAGCACAAGCCACGGCTCTGCATCAGTTGCCTCCCACCACACAGACAGAGGTGCTTGGCAGGGTGCCAGAGCAGGAGAAGCCATCGTCTGTAACGAGTGACTCACTCAGCCAGCCCACTGCTTTCCCACTCCCATCATTTGATGATATTAAACTGCCAAGTTATGTTGAAAAGTTTCTCAAACCAGGTGAAATGAAAGCAGGACAGAGTTCAGAAACTAACATGCAGATGACAGAAACTAAATTCCATAATTTCAGAATGGATTTTGATAGTAATGCGAATCACAACAGAATGCCTAACTTTCCTCCTGACCTCTCAGGATCACACATACCAAACCTCTTTGAAGCTCCAGCCTCTGGACCTTGCATATTCACCGAAGGACCTGGGATTGTCATTTATGAACAACCACAGTTTGGAGGAGAAGCTGTTGAAATCTTCAGAGACGTGAAAGATGCTACCTCACTGAAATTATCACCTGCGATATCAGTCCAGGTGATCAATTTCGAAGGCCGTACAATAGCTTTGGAGGAAGGGCCAATGGAGTTAACAAATGTCTGGAATGCAGTTGACTGCGAAGAAAATGCAGATACTCAGAGTGAACCTGTACCTACGTCTTCCATGGTAATTGGCTCCATCAGACACGCAGTGAAGGACTACACCATACCCCAAATTGACCTGTTCACAGACCCACAAGGGATGGGAAGACTGGTATCATACTTTGATGATACGATAGAAACCTGTACTTATGGATTGCCTCAAACCACTGCCTCCATCAGAGTTGTCTCTGGCATTTGGCTGGTTTTTGATCAGCCAGGTTTCCTAGGATGTCTTTCTGTATTGGAGCCAGGAGAGTATCCTGTGCCAGAGACATGGGGCTTCCCAGAGCCATTCGTCAGATCTCTCCGGCCTCTCAAAATGGGTGGAATAAAGGTAGAGAATCCTAATGAACCAAAGGCTATTGTTTACGAGAAACCGTGCTTTGAAGGGGAGTATATGGAAATCGAAAAAGATGTTTTCAGCTTCAAAGAGAAAGATGAAAATTCTGAGATTTCACCTTGTTGGACAAAGAAACTGAGTTCTGTTGGCTCCATTAAAATTCTAGGGGGACTCTGGGTAGGCTATGAAGGAGCAGGGTTCGAGGGGAATCAGTATGTCCTAGAGGAAGGAGAGTATCAGGACTGGAGAGATTGGGGAGCATGCAATGAACAGCTCCAGTCTTTACGACCTGTAGTGGCAGATTTCTTATCtccacatttgaaaatgtacaccGAAAGAGACTTTGGGATGAAAGGAAGCAACATCGATGTGCTGGGACCAGTTCTTGACTTGGAGGAAGTCGGTTATGGGGCAAAAACACAGTCGATTGATGTCATCAGTGGTGTATGGTTGGCTTTTGAGAATCCTAACTTTGGTGGAGAACTGTACATCCTAGAAAGAGGACTCTACTGTAATTATGAGGACTGGGGAGCAAAGAGCTTCAGAATCTCTTCTCTTCAGCCTGTATTTGTGGCTCAGTTATTTTCTGAGCCTGATTTTCAAGGCATCAGCCACATCGTGGAGGACAATTCGCCAGTTCTTCCGGAGTCATTCTTACTCAGCTCCTGCAAGGTTTTGGCTGGCAGTTGGATAGCATATGAAGGCCAGGAATTCAAAGGAAACCTATATGTACTGGAAGAGGGAGACTACCCTGACCTGACAGCTCTGGGCTGTCCCAGTGTGGACACATCTATCCAATCCATACAGAAAACTGGTTTTGAGTTCTCCCAGCCGTGTATCACACTCTTCTCTCAGGGCAACTTCAGGGGAAGGAGGATGGTTCTGAAGGCTGGAGCCGTAAACCTGCAGCTGGCAGGCGGCAGTAACCATGTCTTCTCTGTGCACGTGGAAGGAGGGATgtGGATAGTTTATGAACACAGTAATTATCGAGGCCGTCAGATTCTCCTGCAGCCCAGTGACATTGCGGACTGGCACAGGTTCAGTGGATGGCACCAGATAGGATCCTTGCGCCCCCTGTTTCAGAAACCACATTACTTTAAGATTCGGAACAAGGAAACGGGGACGCTGATTTCGATCAGTGGCACCGTTGACAACCTCAATCTGATGAGAATTCTGGTTCTGGAGGACACGGGGGAACTGGACCAGATCTGGCTCTACCAAGACGGTCTCTTACAATGCaagatgGTGGAGGACTGCTGTCTGGAAACCTTAGGGAGTATAATCATGGCTGGCTGCAGGCTGTCCCTCTCACCTGAGCCCGGGAAAGAGAACCATTTCTGGACTATATCTCCTGATGGGGTGATAAGGTGTAGCGTGAAGCCCGAGTTCGTTCTGGAAGTGAAAGgAGGTCAACAGTATGACAAAAACCAGGTGATCCTCAATACCTTTGATGAACGGAAGCTGAACCAGAGATGGACTTTGGAGATCCTGTGAGGGTGTGAGTGTCAGGAGCTGTTGCAGGGTAACTGATGGCATACTGCCCCTTTCTATAGCGAATGACAGCGCAGGCTGCAGAGAATTTCTTTCAAATATGTTTGCTTAGCTAGATAGcctgaaaaataaactttttaaattaaggtatttcttatataattatttgattaattaataaacacagattttaaaagcaagacatgagcaaaaaaaaacaaaaaacagactgcAGCATTCCTGCCTGAAATAGAGGATAATATAGATTATGCAGTACATGGGACTATGGCTCTGCTCATACCTCAGCACTGCATACATAGGTTTAAAGATTAagaaacactatatatatttttgaaaatacataccggtatatatatttatattattcctTAAAGGATTAAACCTTTTAACaagaagttttattttattctctggACTGGAAACGCTCTGacattaattttagattttttttgtaattctcgCTTAGTaagattaaagaaaatactCCTTTCCATGTGTAAGCTGTGCTTATTACATTGTTAACAAAGGTCACAGCAGCTGTTCTGAAGCAAAGGACACAGCTTAATAAACGACAGGTGTTCTTGTGCGTCTAATCTGTACCTGTCATGTGCGGGGGAGACTGTCACTGCCTTTAGTTTGTTTCCGTCTTTCATTGTGacaaggtgtttttttgtttttgttttctcaaaggGGCTTCCCATCATTGACATTGTTCACCTACAGATGAAAATTCAGTTAAACTTTATACTCATCTCTATACAGTAGTTATACAAAGCAATCAGTTATACATagtgttttatgtaaaatggtgttaaaaaaaaaaaacactaaatggTCTGTGTACcagttcgtttttttttctttacatataaaGCCTTTGAATGCAGTTACATTAGAACTTCTGTATTATGATATGCACATTGTGTACATGTagatccaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5695 lncRNA downstream 65014 26533880 ~ 26586892 (-) False G4660
TU5694 lncRNA downstream 65014 26585486 ~ 26586892 (-) True G4660
TU5701 lncRNA downstream 90655 26558869 ~ 26561251 (-) True G4665
TU5651 lncRNA downstream 286837 26359857 ~ 26365069 (-) True G4624
TU5778 lncRNA upstream 74516 26758351 ~ 26758880 (-) True G4727
TU5803 lncRNA upstream 107323 26791158 ~ 26832411 (-) True G4752
TU5838 lncRNA upstream 280925 26964760 ~ 26965399 (-) True G4782
TU5894 lncRNA upstream 1365704 28049539 ~ 28058411 (-) True G4829
TU5906 lncRNA upstream 1420774 28104609 ~ 28104980 (-) True G4838
AMCG00003965 mRNA downstream 18203 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003961 mRNA downstream 70452 26576136 ~ 26581454 (-) True AMCG00003961
AMCG00003960 mRNA downstream 205068 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003953 mRNA downstream 362502 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003950 mRNA downstream 394867 26225466 ~ 26257039 (-) True AMCG00003950
AMCG00003968 mRNA upstream 87459 26771294 ~ 26771916 (-) True AMCG00003968
AMCG00003967 mRNA upstream 146519 26830354 ~ 26866943 (-) True AMCG00003967
AMCG00003970 mRNA upstream 256203 26940038 ~ 26957628 (-) True AMCG00003970
AMCG00003974 mRNA upstream 281887 26965722 ~ 26968015 (-) True AMCG00003974
AMCG00003975 mRNA upstream 322138 27005973 ~ 27040898 (-) True AMCG00003975
TU5513 other downstream 750294 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2356130 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2356130 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 3118024 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 181319 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 5625645 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 5723967 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 5909792 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7448263 34132098 ~ 34135600 (-) True G5801

Expression Profile