RNA id: AMCG00003968


Basic Information

Item Value
RNA id AMCG00003968
length 408
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00003968
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26771294 ~ 26771916 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGCATGGAACCCTGAGCCGTGTGAGAAGCGCCATCACCTCACTAGGTGTGCTGTAGATGTGGGCTGTGGCCAGGATTTGGACCACCATGGCCGACCCAGCCTGGCGGTAGAAGAATCCCGCTCCCTCTTCCACTGCTACATCAACGAAGGAGAGCAGGGGGCTCGGGGGAAACAGGGCAGCAAGGCCTTCAGCCTGGACCACAACAGCCTTCTGGCTCATGGGACAATGGACGGGTGCCGGCTGGACCAGGACATGAACTCAATGTCCCACTTCAATATCCCCAACTTTGTCAACTCTGAGGACAGTTCCGCACTGGAGGATGATGACTTGCTTCTCTGTGAGCAGCCGGTTACGCTTGGCAGTGTGACCAGACACAACAGCTTGCACCAAATTATCCACTAA

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0040007 growth biological_process
GO:0050789 regulation of biological process biological_process
GO:0044464 obsolete cell part cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5778 lncRNA downstream 12414 26758351 ~ 26758880 (-) True G4727
TU5695 lncRNA downstream 184402 26533880 ~ 26586892 (-) False G4660
TU5694 lncRNA downstream 184402 26585486 ~ 26586892 (-) True G4660
TU5701 lncRNA downstream 210043 26558869 ~ 26561251 (-) True G4665
TU5651 lncRNA downstream 406225 26359857 ~ 26365069 (-) True G4624
TU5803 lncRNA upstream 19242 26791158 ~ 26832411 (-) True G4752
TU5838 lncRNA upstream 192844 26964760 ~ 26965399 (-) True G4782
TU5894 lncRNA upstream 1277623 28049539 ~ 28058411 (-) True G4829
TU5906 lncRNA upstream 1332693 28104609 ~ 28104980 (-) True G4838
TU5988 lncRNA upstream 1596083 28367999 ~ 28369982 (-) True G4900
AMCG00003966 mRNA downstream 87459 26651906 ~ 26683835 (-) True AMCG00003966
AMCG00003965 mRNA downstream 137591 26624640 ~ 26633703 (-) True AMCG00003965
AMCG00003961 mRNA downstream 189840 26576136 ~ 26581454 (-) True AMCG00003961
AMCG00003960 mRNA downstream 324456 26425339 ~ 26446838 (-) True AMCG00003960
AMCG00003953 mRNA downstream 481890 26281536 ~ 26289404 (-) True AMCG00003953
AMCG00003967 mRNA upstream 58438 26830354 ~ 26866943 (-) True AMCG00003967
AMCG00003970 mRNA upstream 168122 26940038 ~ 26957628 (-) True AMCG00003970
AMCG00003974 mRNA upstream 193806 26965722 ~ 26968015 (-) True AMCG00003974
AMCG00003975 mRNA upstream 234057 27005973 ~ 27040898 (-) True AMCG00003975
AMCG00003976 mRNA upstream 463403 27235319 ~ 27254865 (-) True AMCG00003976
TU5513 other downstream 869682 25897934 ~ 25901612 (-) True G4521
TU5211 other downstream 2475518 24263907 ~ 24295776 (-) False AMCG00003909
TU5210 other downstream 2475518 24288131 ~ 24295776 (-) False AMCG00003909
TU5014 other downstream 3237412 23529519 ~ 23533882 (-) True AMCG00003893
TU5805 other upstream 93238 26865154 ~ 26869578 (-) False AMCG00003967
TU6736 other upstream 5537564 32309480 ~ 32309910 (-) True G5502
TU6786 other upstream 5635886 32407802 ~ 32426563 (-) True G5540
TU6815 other upstream 5821711 32593627 ~ 32596407 (-) True G5566
TU7138 other upstream 7360182 34132098 ~ 34135600 (-) True G5801

Expression Profile