RNA id: AMCG00003985


Basic Information

Item Value
RNA id AMCG00003985
length 4168
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00003985
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28354515 ~ 28369974 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGCTGCAGAGTGTTACACACGTGAGACGTTTGACAGCTGGAAGCGACCTTCCTTGGAGATCGAGCAGATCCGCGAAGAAAGCCGCAGACGCAGTGTTAGCTTGGCAAATCTGTCATATGGAGGATTGAACGCCTCATCTCCGAAATCTATTATAAATAGACGACCCAGTAAAGTCAACTGTTGGTCTTTAGATTGCGCGGAGGCTTTGTGTAGAACTGGAGCATCAGTTTCATCTCATTTGTTTGCAGATGACAACCGAAATAAAAACCGCACAAAGAAGGAGAAGAGAAGGGTTATCCAAAAACCTGTTGGGACAGTAGAATATACAGCAGGGCCTCAGGACACTCTAAATTGTATAGCTTTGAAGTTCAACATCACTCCAAATAGACTAGTGGAAATCAACAGGCTTTTCTCTCATACCATTGTTCCTGGGCAGactcTCTATGTTCCTGATGTGGCTCAGCAGGCCGAAGACGCCAGTTCTCTGCCTCACAGCCCCAGCAGTCCAGCATCCACCCTCTCCTCAACTGACCAAGAGTTTGATAAACTGTCGGATGCTGACTTTGCCAGGAAATCATCAAAACCCATCCAGAGAGTGCTGTCCTCAGCCTCTGAAGAGGAAGAGCCCATGACTGTGAAATTTCTCAAAATGAGCTGTAGATACATCACTGACGGGAAGGGAGTAGTTGGTGGAGTTATGATTGTGACCCCAAACAACATCATGTTTGACCCTCATAAGTCTGACCCCCTGGTGATAGAGAATGGCTGTGAAGAGTACGGACTGATTTGCCCCATGGAGGAGGTTGTCTCCATCGCTCTGTACAACGATATATCACACATGAAAATCAAAGATGCACTGCCATCCGATCTACCCAAGGATCTTTGTCCCCTCTACAGGCCTGGGGAGTGGGAGGACCTCTCCTCTGAGCAAGACATCAATCCCTTTAGCCGCTTCAAGGCCTTGAATAAAGAGAAACGCCAAGCACACATGGATGAGGTAGAAATAATCACACCAGAATCGGAGACCACAGAGAAGTCCCAGTCTGATGAAGGATTCACAGAGATAGAACCACCTGGAAACACTGATAAATTACTAATAGAGCCAGTGTCAAGTGGTACCTGTATTCCTGTCAGTGATTTTTCCCAAGCAGACCAAGAGGCCATGGGGCCAGTGGTCTTTGAGCAAGACCAGCCTGAAGATGAAGCAATTTCAAATCTGCAGGGTACAGCATGCCCTGTGTTGGAGGAGTCAGAGAAAGGAGAGAAGACTGAGCTAGAGAAACAAGGGTCTCTCCAAAATACTCAGAAAACAGATATTTCTATACTTAAAGACATTCCAAAAGGGAAAGCACTAAAAGGGAGTGAATTACCTGATGAGTTGAGTCATGAGGAAAATGCACTTGATACACGTAAACTCTCTTATGTAGATTCAACACAGTCCGAGATATTACACAACAGTAAGAACGAGGCCTGCTCGTATACAACTGCACACAAGCCAGCTGTAGACCAGAAGAGCAAACGCAGCTGTTTTAAAGAAATAGAGGTGTCTGGTAAATTGAGCCAATCTGAGGCAGACATAGTCTCTGAAGTATTAAATGGAGACACATCATGTCTGCTGTCTCAGTCGGAGGAAGACGAACAACAGCAGAACAGCGAATCAGAAATGAAATCTTGGCTGTTCAAAAGAATACAAGGACCAATTGAggATATGCTGGTGTCAAAGGAGGAGAAAATAGGAATTGCTTTCCTTAACCTCACACTTCATTCATTTTTCAGGGTGGATCATCTGTATGCCTTCTTTGTGCAGTGGTCTCCAGAGATCTATGGAAAAGATGCCAAAGAGCAAGGCTTCATTGTGGTGGAGAAGGATGAGCTCAATATGATAGACAACTTCTTTAGTGATCCAACTCCGAAAAGCTGGGAGATCATTACTGTTAATGAGGCAAAACGACGGCAGAGCTGTGGCAGCtatgatgaggaggaggaggatgtggAAGACCTGCTGCCTGTGCTGATTGATGACAGTGTGCTGTTGGAGGAGATGCACATTGAAAGGCTCGCACAGCGCCTGCCAGCCCGCACTCAGGGCTATCCATGGCGATTAGTGTACAGTACGGCTGTTCACGGATCGAGCCTGAAAACCCTGTACCGCAACCTGGCCCAGCTGGACAACCCAGTGCTCTTGGTCATTAAAGATATGGACAATCGGGTGTTTGGGGCGCTCACGTCACATCCGTTCAGAGTCAGCGATCACTGCTACGGCACAGGAGAGACATTCCTCTACACCTTTAGTCCTGAGTTTAAGATGTTCAGGTGGAGTGGAGAAAATTCTTACTTCATCAAAGGAGACACCGACTCCATACAGCTGGGATGTGGAGGGGGACACTTTGGCCTGTGGATGGATGCAGACTTGTACCACGGCTCCAGCTATCCCTGCCACACTTTCCACAACGAACCGCTGTCCAAGAAGGAAGACTTTATCATTCAAGAGCTTGAAGTATGGACCTTCGAGTAAAAAAGCCGAGGACTGGAGTAATGAGTTGCCTTAGTTATGTACATAGTTTACATAAGGGCCAACAGTTGAGAGGACTGGTTGGTTACATTCACACTGCTGGCTGCCTTAGACCACAAAGCAGTGCTTGTGAGGCTTCCTGTGCCACAGCATGCTGGCCAAACTTCGCGGCTGTACAAGTCCCAAACCACTACAAGCTGGCCAAAGGAAGTGCTGATGGGGGAGTTTGTCGCCTCCTTGTTTGTTCTCGTTTTTCTGGTTTATTTCAATAGGTGGTTGGGCCAAACTGAAGACACGGAGAAATCAGGATAGTGTTTCACCACGTCATGTGCTTCATTTTGTACACAAGAAATCGTGTATTCTCTTTTACTTTTTCATGCATCACTTAGTAATTCTAAGAAAACATTGTAGACTTGATCAATCCGTCCcatcaaaagaaaatcaatgcacaaaccatttatattttgaccaaatgtttgtttgtgtttgtatgtgtaatttttatgtttgtgtgtgtattttttcagatattttgtttttcttttatatattaataaacaaaacttgtaaatgaaatgtatgtattcccTTAtcatataaggaaattatttttgtttgtttagttttctgtttgaattttcttagttttttctttcagtgctgGCACTGGATTGTCAGGAATGCAATGTTTCCTTTaggattatttaattatcattgttttaaatacaaatgttgctCTACAATCAAAGTCTTTCCCTGCATTAAGTGCAGTACTAAATGCCTTAGGCTTGGAGCATTGTAGAGACGGATGAGACCAGTCATTCACAAAGAATTTAGTGCAAGTGATTCAGAGTGTTATTTTTCACTTCATCAACCTTCTTCATGTATAAAACTTTGAGCGTGTGAGAAGGTAACAGTCTGAAAATGAATTGTGAGATCTAAATGGTTGTTGTTGTCTGTGGAATGTACTGTCTGCCAGTGCACCAGTGCTGGTTCTGTTCTTCTGCTAACATTCACAGCTGCTTGGAAAATTAACTTGTGTATTGATGCATATGAACCACTCGCATCGATAGGGTAGGGAAAAACTCAggtgtgttaatttatttaaagcatgATGAATTCCTCTGCTAACAGCGTCTTTTTCTCAATGTATTTCTATAGAAGACTGCATATATATCACAGTGGCTGTTATTTACCATTAAATATGTTCTAATAGAATGTCATATCCTTCCACCGGAGGCCATCTGTCCCAGTCCTGTTTTAGgcattgtggtttatttatgaCTAAACAACATGTATGCTATTATTGGGTCATGTCTTTCACTAAATGATTGATTGACCATGTGTTTACCATTCTCGAAGTTCACATCAACTATGAAATGtaagaaagtaaataaaataaaaaatccaagCAAAAGCTCAAGTCTGGAACTGCcatcatattttctttctaaaaatgtaagCCTTGTCTGattattgcatatatatatatatatatataaaaacactgatGAAACACTATAGCAAAGTAAGCCATGTAGTACTCCATACGTGTTCTTTGTGAGACCAAAAATGTTCCATGCTCTGTGGGATaagcaattatatatttattacactgttgcaatgttttaaaaataaaacatgtattgta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5905 lncRNA upstream 248808 28104210 ~ 28105707 (+) True G4837
TU5870 lncRNA upstream 576856 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 578073 27721460 ~ 27776442 (+) True G4806
TU5865 lncRNA upstream 770481 27583571 ~ 27584034 (+) True G4804
TU5845 lncRNA upstream 1072274 27282004 ~ 27282241 (+) True G4787
TU5991 lncRNA downstream 28889 28398863 ~ 28399688 (+) False AMCG00003988
TU6005 lncRNA downstream 84459 28454433 ~ 28464850 (+) False AMCG00003990
TU6007 lncRNA downstream 96943 28466917 ~ 28468944 (+) True G4917
TU6014 lncRNA downstream 198210 28568184 ~ 28576934 (+) False AMCG00003991
TU6060 lncRNA downstream 294528 28664502 ~ 28664710 (+) False AMCG00003993
AMCG00003983 mRNA upstream 79127 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003982 mRNA upstream 256189 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003980 mRNA upstream 259913 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003973 mRNA upstream 848366 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003972 mRNA upstream 904621 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003989 mRNA downstream 3172 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003988 mRNA downstream 9837 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003990 mRNA downstream 84445 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003991 mRNA downstream 198851 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003992 mRNA downstream 217857 28587831 ~ 28591593 (+) True AMCG00003992
TU5898 other upstream 251304 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 286729 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2558724 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3670595 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4641381 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1901236 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2518021 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4760146 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6482889 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7382559 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028756 False 4065 mRNA 0.50 17 NC_007130.7 7309050 ~ 7406933 (-)