RNA id: TU5991


Basic Information

Item Value
RNA id TU5991
length 826
lncRNA type sense_over
GC content 0.51
exon number 1
gene id AMCG00003988
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28379811 ~ 28399741 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTAGTCAAtgcatgttttgtaaaatataattttaatgatatccttggatattattaaaaaatgaatttatgcCATCCATTACCcttgtttaagaaaacaaattgacagGGGGTTATGAATAGCTCCACTGGAGATATTAAAGCTCATTCTTCCAGCGCTAAACTTCATTTGCCAGTTGTTGCCAATTTATAGCTTAGTAAGGCtctcatttatttacatttgggAATGCAAGGCGCCCTGCTGGTGCTGTAACTCTATCCTCTGTACCCCAAGTTCATACGAACGGCTGgtttactttaataaaacacgGACAATGCACCTGGAGATCACTGCAGACAGGTATGTTTAGTGCACAAAAACAGTTGACAAGTACATTAAGAATAAATATCGTAACGCTTTCCTACACTGGTGGTGACTTGGATGCCGTCCATTAGTGTAGAAAAGTTCTTTCTCTTGGCTCTGGTTTTAATACATCTTCTCTCCTAGTTCCCTATTTGAGTGCATTTACAGTTCATGGTGATACTGTAACCTTTAAATTCTAGGCCTGTTCATCTGTGATCTCATTTTCTGACTATTTACTTTCCTTCActcaaaagtatatattttgaacTTGATTACTTTGTGTATACCATCCTAATAGCAGACAAGTTATGAAATTAGTTGTGGATCCCTTCCTGATTATGATTTTTGTTCCCAATGAGGCATTTTgactgaaagaaaattaaaaaagcctctcagaaaacctgtttttctttttatctttatgATGTTATGTTGGGTTTGTGTATTTCTTGTGTAAAAATTAAACCCTTCTACAACCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5905 lncRNA upstream 293156 28104210 ~ 28105707 (+) True G4837
TU5870 lncRNA upstream 621204 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 622421 27721460 ~ 27776442 (+) True G4806
TU5865 lncRNA upstream 814829 27583571 ~ 27584034 (+) True G4804
TU5845 lncRNA upstream 1116622 27282004 ~ 27282241 (+) True G4787
TU6005 lncRNA downstream 54745 28454433 ~ 28464850 (+) False AMCG00003990
TU6007 lncRNA downstream 67229 28466917 ~ 28468944 (+) True G4917
TU6014 lncRNA downstream 168496 28568184 ~ 28576934 (+) False AMCG00003991
TU6060 lncRNA downstream 264814 28664502 ~ 28664710 (+) False AMCG00003993
TU6083 lncRNA downstream 492996 28892684 ~ 28893031 (+) True G4981
AMCG00003989 mRNA upstream 19690 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003985 mRNA upstream 28889 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003983 mRNA upstream 123475 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003982 mRNA upstream 300537 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003980 mRNA upstream 304261 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003990 mRNA downstream 54731 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003991 mRNA downstream 169137 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003992 mRNA downstream 188143 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00003993 mRNA downstream 240486 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003994 mRNA downstream 290200 28689888 ~ 28698767 (+) True AMCG00003994
TU5898 other upstream 295652 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 331077 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2603072 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3714943 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4685729 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1871522 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2488307 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4730432 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6453175 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7352845 35752533 ~ 35766180 (+) True AMCG00004158